Recent Publications/Submissions

Recent Publications Since 2010

Book || 2010 || 2011 || 2012 || 2013 || 2014 || 2015 || 2016

Book (2007)

P.X.-K. Song Correlated Data A nalysis: Modeling, Analytics and Applications (352 pages) [Table of Contents] and [Book Webpage/Supplementary Material] Springer: New York.

2010

Gao, X and Song. Composite likelihood Bayesian information criteria for model selection in high dimensional data. JASA 105, 1531-1540.[paper ].
Lin, H and Song. Longitudinal Semiparametric Transition Models with Unknown Link and Variance Functions. Statistics and Its Interface 3, 197-209.
Lu, X, Nan, B, Song and Mary Fran Sowers. Longitudinal Data Analysis with Event Time as a Covariate. Statistics in Biosciences 2, 65-80.

2011

Zhu, B., Taylor, J.M.G. and Song. Semiparametric stochastic modeling of the rate function in longitudinal studies. Journal of the American Statistical Association 106, 1485-1495.
Zhu, B, Song and Taylor, JMG. Stochastic functional data analysis: A diffusion model-based approach. Biometrics 67, 1295-1304.
Song, M. Li and Y. Yuan. Rejoinder to "Joint regression analysis for discrete longitudinal data" by Madsen and Fang. Biometrics 67, 1171-1175.
Chen, Y., Kalbfleisch, J.D., Li, Y., Song and Zhou, Y. Computerized platform for optimal organ allocations in kidney exchanges. BIOCOMP2011 Conference (acceptance rate 21%).
Chen, Y. and Song. Computerized decision support system for kidney paired donation program. Conf Proc IEEE Eng Med Biol Soc. 2011: 3172-5.
Qu, A., Yi, G.Y., Song and Wang, P. Assessing the validity of weighted generalized estimating equations. Biometrika 98, 215-224.
Gao, X and Song. Composite likelihood EM algorithm with applications to multivariate hidden Markov model. Statistica Sinica 21, 165-186.
Han, P. and Song. A note on improving quadratic inference functions using linear shrinkage approach. Statistics and Probability Letters 81, 438-445
S.P. Norman, Song , Y. Hu and A.O. Ojo. Transition from donor candidates to live donors: The impact of race and undiagnosed medical disease states. Clinical Transplantation 25, 136-145.

2012

Bai, Y., Song and Raghunathan, T.E. Joint composite estimating functions in spatio-temporal models. Journal of the Royal Statistical Society Series B 74, 799-824[paper].
Wang, F., Wang, L. and Song. Quadratic Inference Function Approach to Merging Longitudinal Studies: Validation Test and Joint Estimation. Biometrika 99, 748-754 [paper].
Zhou, Q.M., Song and Thompson, M.E. Information ratio test for model misspecification in quasi-likelihood inference. Journal of the American Statistical Association 107, 205-213.
Zhang, S., Song, Shi, D. and Zhou, Q.M. Information ratio test for model misspecification on parametric structures in stochastic diffusion models. Computational Statistics and Data Analysis 56, 3975-3987. [ Supplementary Materials ].
Chen, Y., Li, Y., Kalbfleisch, J.D., Zhou, Y., Leichtman, A. and Song. Graph-based optimization algorithm and software on kidney exchanges. IEEE Transaction on Biomedical Engineering 59(7), 1985-1991.
Kang, J., Ye, W, Wang, L., Veiga-Lopez, A., Padmanabhan, V. and Song. Local Mixed-Effects Fitting for Detecting Reproductive Hormone Surge Times. Statistics in Biosciences 4, 245-261.
Song, Freeland, R.K., Biswas, A. and Zhang, S. Statistical analysis of discrete-valued time series using categorical ARMA models. Computational Statistics and Data Analysis 57, 112-124.
Hu, Y. and Song. Sample size determination for quadratic inference functions in longitudinal design with dichotomous outcomes. Statistics in Medicine 31, 787-800.
Lu, X. and Song On efficient estimation in additive hazards regression with current status data. Computational Statistics and Data Analysis 56, 2051-2058.
C. A. Gadegbeku, D. S. Gipson, L. Holzman, A. O. Ojo, Song, L. Barisoni, M. G. Sampson, J. Kopp, K. Lemley, P. Nelson, C. Lienczewski, S. Adler, G. Appel, D. Cattran, M. Choi, G. Contreras, K. Dell, F. Fervenza, K. Gibson, L. Greenbaum, J. Hernandez, S. Hewitt, S. Hingorani, M. Hladunewich, M. Hogan, S. Hogan, F. Kaskel, J. Lieske, K. E.C. Meyers, P. Nachman, C. Nast, A. Neu, H. Reich, J. Sedor, C. Sethna, H. Trachtman, K. Tuttle, O. Zhdanova, G. Zilleruello, M. Kretzler. Design of the Nephrotic Syndrome Study Network (NEPTUNE): A Multi-Disciplinary Approach to Understanding Primary Glomerular Nephropathy. Kidney Internaltional 83(4), 749-756.
Clark, N.M., Lachance, L., Benedict, B., Doctor, J.L., Gilmore, L., Kelly, C., Krieger, J., Lara, M. Meurer, J., Milanovich, A. F., Nicholas, E., Song , Rosenthal, M., Stoll, S.C., Wilkin, M. Improvements in health care use associated with community coalitions: Long term results of the Allies Against Asthma Initiative. American Journal of Public Health 103(6), 1124-1127.
Tanzer, M., Tran, C., Messer, K., Kroeker, A., Herreshoff, E., Wickman, L. Harkness, C., Song and Gipson, D. Inpatient healthcare utilization by children and adolescents with systematic lupus erythematosus and kidney involvement. Arthritis Care & Research 65, 910-917.
Tran, C.L., Ehrmann, B.J. Messer, K.L., Herreshoffa, E., Kroekera, A., Wickman, L., Song , Kaspera, N. and Gipson, D.S. Recent trends in healthcare utilization among children and adolescents with hypertension in the United States. Hypertension 60, 296-302.
Media Report [ CNN ] [ American Heart Association ][ Yahoo! News ][ MSN Health ] [ CBS]
Heung, M., Wolfgram,D, Kommareddi, M., Hu, Y., Song and Ojo, A. Fluid overload at initiation of renal replacement therapy is associated with lack of renal recovery in patients with acute kidney injury. Nephrology Dialysis Transplantation 27(3), 956-961.
Clark, N.M., Baptist, A.P., Ko, Y., Leo, H.L. and Song The relationship of season of birth to asthma and allergy in urban African American children 10 to 13 years of age. Journal of Asthma 49, 1037-1043.
Ross, J., Yang, Y., Song, Clark, N.M. and Baptist, A.P. Quality of Life, Health Care Utilization, and Control in Older Adults with Asthma. Journal of Allergy and Clinical Immunology 1, 157-162.
Gipson, D.S., Messer, K.L., Tran, C.L. Herreshoff1, E.G., Samuel, G.P., Massengill,S.F., Song and Selewski, D.T. Inpatient Healthcare Utilization in the United States Among Children with Nephrotic Syndrome. American Journal of Kidney Diseases 61, 910-917.

2013

Ko, Y., Song and Clark, N.M.(2013). Declines with Age in Childhood Asthma Symptoms and Health Care Use: An Adjustment for Evaluations. Annals of the American Thoracic Society 11, 54-62. This paper is dedicated to the memory of our wonderful colleague Dr. Noreen M. Clark who passed away recently.
Baptist, A.P., Ross, J.A., Yang, Y., Song and Clark, N.M. A randomized controlled trial of a self-regulation intervention for older adults with asthma. Journal of the American Geriatrics Society 61(5), 747-753.
Song , Li, M. and Zhang, P. Vector Generalized Linear Models: A Gaussian Copula Approach. Copulae in Mathematical and Quantitative Finance edited by P. Jaworski, F. Durante and W.K. Hardle, 239-264, Springer: Berlin.
Barrantes, F., Luan, F. L., Kommareddi, M., Alazem, K., Yaqub, T., Roth, R. S., Sung, R. S., Cibrik, D. M., Song and Samaniego, M. History of Chronic Opioid Usage and Clinical Outcomes Post Kidney Transplantation. Kidney International 84, 390-396.
Alba, J.D., Song and Wang, P. Is There a Positive Association between M&A and Non-M&A FDI? Firm-level Evidence from Japanese FDI into US. Singapore Economic Review 58, 1350028.
Gipson, D.S., Selewski, D.T., Massengill, S.F., Wickman, L., Messer, K.L., Herreshoff, E., Corinna, B., Ferris, M.F., Mahan, J.D., Greenbaum, L.A., MacHardy, J., Kapur, G., Chand, D.H., Goebel, J., Baletta, J.M. Geary, D., Kershaw, D.B., Pan, C.G., Gbadegesin, R., Hidalgo, G., Lane, J.C. Leiser, J.D., Plattner, B.W., Song , Thissen, D., Liu, Y., Gross, H.M. and DeWalt, D.A. Gaining the PROMIS Perspective from Children with Nephrotic Syndrome: a Midwest Pediatric Nephrology Consortium Study. Health and Quality of Life Outcomes 11:30.
Wickman, L., Afshinnia, F., Wang, S.Q., Yang, A., Wang, F., Chowdhury, M., Graham, D., Hawkins, J., Nishizono, R., Tanzer, M., Wiggins, J., Escobar, J.A., Rovin, B., Song, P. , Gipson, D., Kershaw, D. and Wiggins, R.C. Urine podocyte mRNAs, proteinuria and progression in human glomerular diseases. Journal of the American Society of Nephrology 24, 2091-2095.
Cibrik, D.M., Warner, R.L., Kommareddi, M., Song, P. Luan, F.L. and Johnson, K.J. Identification of a protein signature in renal allograft rejection. Proteomics Clinical Applications 7, 839-849.

2014

Bai, Y., Kang, J. and Song. Efficient pairwise composite likelihood estimation for spatial-clustered data. Biometrics 70, 661-670. Download [paper] and [Software: R package GeoCopula].
Han, P., Song, and Wang, L. Longitudinal Data Analysis Using the Conditional Empirical Likelihood Method. Canadian Journal of Statistics 42, 404-422.
Li,Y., Song, Zhou, Y., Leichtman, A.B., Rees, M.A. and Kalbfleisch, J.D. Optimal Decisions for Organ Exchanges in a Kidney Paired Donation Program. Statistics in Biosciences 6, 85-104.
Li, Y., Song, Leichtman, A.B., Rees, M.A. and Kalbeisch, J.D. Decision making in kidney paired donation programs with altruistic donors. Statistics and Operations Research Transactions (SORT) 38, 53-72.
Chen,Y., Berrocal, V., Bingham, R. and Song. Analysis of spatial variations in the effectiveness of graduated driver's licensing (GDL) program in the state of Michigan. Spatial and Spatio-temporal Epidemiology 8, 11-22.
Patel, M.R., Caldwell, C., Song and Wheeler, J.R.C. Patient perceptions of asthma-related financial burden: public vs private health insurance in the United States. Annals of Allergy, Asthma & Immunology 113, 398-403.
Lachance, L., Benedict, M.B., Doctor, J.L., Gilmore, L.A., Kelly, C., Krieger, J., Lara, M., Meurer, J., Milanovich, A.F., Nicholas, E., Rosenthal, M., Song, Stoll, S.C., Awad, D.F., Wilkin, M.K. and Clark, N.M. Asthma coalition effects on vulnerable sub groups of children: the most frequent users of health care and the youngest. Journal of Asthma 51(5), 474-479.
Selewski, D. T. , Massengill, S. F., Troost, J., Wickman, L., Messer, K. L., Herreshoff, E., Bowers, C., Ferris, M. E., Mahan, J. D., Greenbaum, L. A., MacHardy, J., Kapur, G., Chand, D. H., Goebel, J., Barletta, G. M., Geary, D., Kershaw, D. B., Pan, C. G., Gbadegesin, R., Hidalgo, G., Lane, J. C., Leiser, J. D., Song , Thissen, D., Liu, Y., Gross, H. E., DeWalt, D. A., Gipson, D. S. Gaining the Patient Reported Outcomes Measurement Information System (PROMIS)Perspective in Chronic Kidney Disease: a Midwest Pediatric Nephrology Consortium study. Pediatric Nephrology 29(12), 2347-2356.
Spinale, J.M., Mariani, L.H., Kapoor, S., Zhang, J., Weyant, R., Song,, Wong, H.N., Troost, J.P., Gadegbeku, C.A., Gipson, D.S., Kretzler, M., Nihalani D. and Holzman,L.B. A reassessment of soluble urokinase-type plasminogen activator receptor in kidney disease. Kidney Internationl 87, 564-574.
Cheng, D., Song and Liu, Z. Kidney paired donation system. Chinese Journal of Nephrology, Dialysis & Transplantation 23(4), 385-289.

2015

Ma, S. and Song. Varying index coefficient models. Journal of the American Statistical Association 110, 341-356. Download [paper]
Lu, X. and Song. Efficient Estimation of the Partly Linear Additive Hazards Model with Current Status Data. Scandinavian Journal of Statistics 42, 306-328. Download [paper]
Wang, F., Song and Wang, L. Merging multiple longitudinal studies with study-specific missing covariates: A joint estimating function approach. Biometrics 71, 929-940. Download [paper].
Bray, M. and Song. Comment on "Statistical modelling of citation exchange between statistical journals by C. Varin, M. Cattelan and D. Firth". Journal of the Royal Statistical Society Series A 179, 42.
Bray M., Wang W., Song, Leichtman A. B., Rees M. A., Ashby V. B., Eikstadt R., Goulding A. and Kalbfleisch J. D. Planning for uncertainty and fallbacks can increase the number of transplants in a kidney paired donation program. American Journal of Transplanation 15, 2636-2645.
Zhou, Q.M., Song and Thompson, M.E. Profiling heteroscedasticity in linear regression models. Canadian Journal of Statistics 43, 358-377. [ This is an invited paper for Zhou's Pierrer Robillard Award]
Feng, D., Song and Tony S. Wirjanto. Time-deformation modeling of stock returns by duration processes. Econometric Reviews 34, 480-511.
Han, P., Song and Wang, L. Achieving semiparametric efficiency bound in longitudinal data analysis with dropouts. Journal of Multivariate Analysis 135, 59-70.
D. T. Selewski, J. P. Troost, S. F. Massengill, R. A. Gbadegesin, L. A. Greenbaum, I. F. Shatat, Y. Cai, G. Kapur, D. Hebert, M. J. Somers, H. Trachtman, P. Pais, M. E. Seifert, J. Goebel, C. Sethna, J. D. Mahan, H. E. Gross, E. Herreshoff, Y. Liu, Song, B. B. Reeve, D. A. DeWalt, D. S. Gipson. The Impact of Disease Duration on Quality of Life in Children with Nephrotic Syndrome: a Midwest Pediatric Nephrology Consortium study Pediatric Nephrology. Pediatric Nephrology 30, 1467-1476.
R. Saran, Y. Li, B. Robinson, J. Ayanian, R. Balkrishnan, J. Bragg-Gresham, J.T. Chen, E. Cope, D. Gipson, K. He, W. Herman, M. Heung, R.A. Hirth, S.S. Jacobsen, K. Kalantar-Zadeh, C.P. Kovesdy, A.B. Leichtman, Y. Lu, M.Z. Molnar, H. Morgenstern, B. Nallamothu, A. M. O'Hare, R. Pisoni, B. Plattner, F.K. Port, P. Rao, C.M. Rhee, D.E. Schaubel, D.T. Selewski, V.Shahinian, J.J. Sim, Song , E. Streja, T.M. Kurella, F. Tentori, P.W. Eggers, L.Y. Agodoa, K.C. Abbott (2015). US Renal Data System 2014 Annual Data Report: Epidemiology of Kidney Disease in the United States. American Journal of Kidney Diseases 66 (1 Suppl 1), S1-S306.
Ju, W., Nair, V., Smith, S., Zhu, L., Shedden, K., Song, Mariani, L.H., Eichinger, F.H., Berthier, C.C., Randolph, A., Lai, J. Y.-C., Zhou, Y., Hawkins, J.J., Bitzer, M., Sampson, M., Thier, M., Solier, C., Duran-Pacheco, G.C., Duchateau-Nguyen, G., Essioux, L., Schott, B., Formentini, I., Magnone, M.C., Bobadilla, M., Cohen, C.D., Bagnasco, S.M., Barisoni, L., Lv, J., Zhang, H., Wang, H.-Y., Brosius, F.C., Gadegbeku, C.A. and Kretzler, M., for the ERCB, C-PROBE, NEPTUNE and PKU-IgAN Consortium. Tissue Transcriptome-driven Identification of Epidermal Growth Factor as a Chronic Kidney Disease Biomarker. Science Translational Medicine 7(316), 316ra193.

2016

Tang, L. and Song Fused Lasso approach in regression coefficients clustering - Learning parameter heterogeneity in data integration. Journal of Machine Learning Research 17, 1-23. Download [paper]
Zhong, P., Lan, W., Song and Tsai, C. Tests for covariance structures with high-dimensional repeated measurements. Annals of Statistics (to appear).
Wang, W., Bray, M., Song and Kalbfleisch, J.D. A look-ahead strategy for non-directed donors in kidney paired donation. Statistics in Biosciences (to appear).
Zhou,Y. and Song . Regression analysis of networked data. Biometrika 103, 287-301. Download [early online version].
Wang, F., Wang, L. and Song. Fused Lasso with the adaptation of parameter ordering in combining multiple studies with repeated measurements. Biometrics Download [early online version].
Sanchez, B, Wu, M., Song and Wang, W. Study design in high-dimensional classification analysis. Biostatistics Download [early online version].
Lu, X., Pordeli, P., Burke, M. and Song. Partially linear single-index proportional hazards model with current status data. Journal of Multivariate Analysis (to appear).
Zhang, S., Okhrin, O., Zhou, Q.M. and Song. Goodness-of-fit test for specification of semiparametric copula dependence models. Journal of Econometrics 193, 215-233. Download [paper].
Ding, W. and Song. EM algorithm in Gaussian copula with missing data. Computational Statistics and Data Analysis 101, 1-11. Download [paper]
Han, P., Wang, L. and Song. Doubly robust and locally efficient estimation with missing outcomes. Statistica Sinica 26, 691-719. Download [paper]
M. Sampson, C. Robertson, S. Martini, L. Mariani, K. Lemley, C. Gillies, E.Otto, J.B. Kopp, A. Randolph, V. Vega-Warner, F. Eichinger, V. Nair, D. S. Gipson, D. Cattran, D. Johnstone, J. O'Toole, S. Bagnasco, Song, L. Barisoni, J. Troost, M. Kretzler1, J. Sedor and the Nephrotic Syndrome Study Network. Integrative genomics identifies novel associations with APOL1 risk genotype in African American NEPTUNE subjects. Journal of the American Society of Nephrology 27, 814-823.
DS Gipson, JP Troost, R Lafayette, MA Hladunewich, H Trachtman, CA Gadegbeku, JR Sedor, LB Holzman, MM Moxey-Mims, K Perumal, FJ Kaskel, PJ Nelson, KR Tuttle, SM Bagnasco, MC Hogan, KM Dell, GB Appel, JC Lieske, TO Ilori, CB Sethna, FC Fervenza, SL Hogan, PH Nachman, AZ Rosenberg, LA Greenbaum, KE Meyers, SM Hewitt, MJ Choi, JB Kopp, O Zhdanova, JB Hodgin, DB Johnstone, SG Adler, C Avila-Casado, AM Neu, SR Hingorani, KV Lemley, CC Nast, TM Brady, L Barisoni, A Fornoni, JC Jennette, DC Cattran, MB Palmer, KL Gibson, HN Reich, MH Mokrzycki, KK Sambandam, GE Zilleruelo, C Licht, MG Sampson, Song, LH Mariani and M Kretzler. Complete Remission in the Nephrotic Syndrome Study Network. Clinical Journal of the American Society of Nephrology 11, 81-89.
L Barisoni, J Troost, C Nast, S Bagnasco, C Avila-Casado, J Hodgin, M Palmer, A Rosenberg, A Gasim, C Liensziewski, L Merlino, A Chang, S Meehan, J Gaut, Song, L Holzman, D Gibson, M Kretzler, B Gillespie and S Hewitt. Reproducibility of the NEPTUNE descriptor-based scoring system on whole slide images and histologic and ultrastructural digital images. Modern Pathology (to appear).
Lemley, K.V., Bagnasco, S.M., Nast, C.C., Barisoni, L. Conway, C.M., Hewitt, S.M. and Song. Morphometry Predicts Early GFR Change in Primary Proteinuric Glomerulopathies: A longitudinal cohort study using generalized estimating equations. PLoS ONE (to appear).
Janevic, M., Stoll, S., Wilkin, M. Song, Baptist, A., Lara, M., Ramos-Valencia, G., Stephens, T.B., Persky, V., Uyeda, K., Lesch, J.K., Wang, W. and Malveaux,F.J. Pediatric asthma care coordination in underserved communities: A quasi-experimental study. American Journal of Public Health (to appear).