![]() ![]() E-Mail:tombb@umich.edu Web:http://tombb.com Street Address: Phone: Full Name: Tommaso F. Bersano-Begey LAST UPDATED ON: Friday, 20-Jun-2008 20:09:51 EDT | My research interests span several related areas of
Computer Science, Molecular Biology and Biomedical Engineering.
Specifically I am interested in:
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| JumpTo: | EDUCATION | RESEARCH | TEACHING | WORK | PUBLICATIONS | CLASSES | |
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click on " Click on the image on the left to go to my personal web page (coming soon). |
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| EDUCATION (University of Michigan - ranked 3rd best graduate university in the nation - source): |
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1998-2003 | Doctorate (Ph.D.) in Computer
Engineering - Artificial Intelligence (Graduated Dec 2003), Title: "Computer evolution of gene circuits for cell-embedded computation , biotechnology, and as a model for evolutionary computation"[abstract][toc][Order] Advisor:John H. Holland |
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1999-2001 | Master (M.S.E.) in BioMedical Engineering (Graduated Dec 2001) |
| Master (M.S.) in Biological Chemistry (Graduated Dec 2001) | |
| Master (M.S.) in Kinesiology(Graduated May 2001) | |
| (1 class away from an extra Master (M.S.) in Psychology - Cognitive Neuroscience) | |
| (3 term papers away from an extra Master (M.S.) in Philosophy) | |
| (3 classes away from an extra Master (M.S.E) in Electrical Engineering, Major in Circuits and Microcircuits, Minor in BioSystems) | |
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1999 Completed PhD Candidacy and PhD Proposal | |
| 1997-1999 | Master (M.ENG.) in Aerospace Engineering(Graduated May 1999) |
| Certificate of Graduate Studies (C.G.S.) in Complex Systems(Graduated May 1999) | |
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1997 Completed PhD Preliminary exam in EECS (1 year ahead of schedule) | |
| 1996-1997 | Master (M.S.E.) in Computer Science Engineering (Graduated May 1997) |
| 1993-1996 | Bachelor of Science and Engineering (B.S.E.) in Computer Engineering (Graduated Cum Laude, May 1996) |
| Frequently Asked Questions:
Why so many degrees? In short, I have a lot of research interests and I felt that I would benefit the most from actually taking extra classes for credit as a way to learn in a more focused way outside of my current degree. There was no interdisciplinary degree that covered exactly what I was interested in, and to the degree of breadth and depth that I wanted, so I extended my own studies to fit my interests. The degrees themselves were not my main focus (as you can see I was just one or two classes away from a few more but didn't have a strong reason to complete them), but I took so many classes (not double-counting) that they started adding up to additional degrees to my conventional PhD studies. Why did you take so many classes? I like to be efficient and stay productive, and I was paying for my studies by working full time as an engineer (I was not a US citizen or resident at the time, I was born in Italy, so I had to choose between receiving support from the university or working toward getting US citizenship through employment). So I had good reasons to want to get the most out of each semester I paid for. Did it slow your studies? No, in fact I completed my undergraduate studies in just 3 years (1-2 years earlier than average), I completed my first Master in just a year, I took the preliminary exams for my PhD at that time (one year ahead of schedule), and completed all the rest of my PhD requirements on schedule, I just got extra degrees and research experience in the process of my normal PhD studies. I was also able to balance my studies with my research and full-time jobs despite taking 3 to 5 times as many classes as a full-time load each semester. | |
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| RESEARCH EXPERIENCE: |
| 2008-Present | Post Doctoral Research Fellow in the Solid State Electronics Laboratory, (Yoon Lab), University of Michigan |
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2005-Present
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Post Doctoral Research Fellow in the Biomedical Engineering Department, (Takayama Lab), University of Michigan |
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2004-2005: |
Visiting Researcher, RIKEN Research Institute, Wako-shi (Tokyo), Japan and Post Doctoral Fellow in the Physics Department, University of Michigan |
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1999-2003: |
Ph.D. research, Artificial Intelligence Lab, University of Michigan (Ph.D. Advisor: John Holland) |
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| 2001-2002 |
Graduate Student Researcher, Biomedical Engineering Department, University of Michigan | Worked on developing bio-chips in which
living cells are embedded in a network of microscale chambers and
channels, using the same technology used to fabricate microprocessors and
micro-scale robotics. Investigated its potential to try
hundreds of simultaneous genetic and chemical manipulations on growing
cells for the purpose of testing potential treatments to alter cellular
aging in a controlled
environment that allows for automated tissue culturing and isolates
individual cells and their aging process.
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2000-2002:
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Graduate Student Researcher / Lab Rotation, Biochemistry Department, Howard Hughes Medical Institute, University of Michigan |
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1996-1997: |
Graduate Student Researcher, Artificial Intelligence Lab, University of Michigan |
Worked on real-time planning and control in
multi-agent systems (using a procedural reasoning system on projects like
the Unmanned Ground Vehicles or the Robocup competition) |
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1995-1996:
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Undergraduate Researcher / Intern, Atmospheric Oceanographic and Space Science, University of Michigan |
Developed evolutionary computation
systems (coding in C and Java) to find solutions in applications ranging
from robotics to image processing and Geo-science. |
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| TEACHING EXPERIENCE: |
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2008- |
Research Mentorship for the Biomedical Engineering Design Class (BME450) |
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2001-2002: |
Graduate Student Teaching Assistant for Introduction to Logic Design (EECS270) |
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2001-2002: |
Graduate Student Teaching Assistant for Intro to C++ Programming (EECS280) |
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1997-1998: |
Graduate Student Teaching Assistant for Computer Organization Architecture and Design (EECS370) for two terms. |
| In official evaluations by students I ranked in the top 25% or better across the University on points like "instructor was effective" and "instructor thoroughly understood the subject matter". | |
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| WORK EXPERIENCE: |
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2005-2009: |
Scientific Consultant |
Developed solutions to scientific problems on a project basis for industrial companies, such as finding a mathematical solution for 3D-trilobe reconstruction from laser projection measurements. |
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2002-2004: |
Senior Software Engineer / Scientist, Leszynsky Group, Seattle. WA |
Developed a shape-recognition SDK for tablet-PCs and other pen-based
applications that used artificial intelligence and complex pattern
recognition to interpret and correct hand-drawn diagrams
and sketches over a variety of applications and domains. |
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2001-2002: |
Software Engineer, R&D Dept. at Netarx.com, Bingham Farms, MI | Redesigned existing system to allow
scalability, generate network simulations for automated predictions and
improvements in a network layout or configuration. Netarx used AI,
automated network traffic monitoring and live technicians to prevent
network crashes before they occur. Developed a web-based tool written in
Java that allowed corporate partners to monitor and navigate through a
dynamic visual representation of their entire network in which any network
congestion,
security breach, or problem is displayed in real time. Additional features
included the ability to predict or deduce possible causes for any network
problem and automatic notifications to support and service people. |
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1998-2001: |
Senior Software Engineer, | ![]() Developed a new laser gauging technology
and software for machines that use laser, ultrasound, and eddy currents to
analyze, measure, and sort parts with variable specifications at high
speeds (~300 parts per minute). This included data collection, data
interpolation to compensate for variable speed/ bouncing/friction, laser
signal calibration to compensate for temperature driven fluctuations,
automatic shape recognition/analysis/fitting and measurement
of relevant
features, OLE, statistical software, and database interfaces and
OpenGL. |
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1995-1996: |
Summer Intern, Data-Center Division of Park-Davis Pharmaceutical Research (now Pfizer), Ann Arbor, MI |
Developed new programs, applications and scripts for 6 NT servers. Helped with migration from VAX systems. Developed an automatic back-up scheme and supervised data back-ups and restores. |
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| PUBLICATIONS: |
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Reviewer for the International Journal:
Board Member and Referee for the following International Conferences:
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Bilingual (Fluent in English and Italian), understands Spanish and French, a lot of computer languages (!) plus a few words of Japanese.. |
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Dual Citizen(USA |
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Clean Room and Microfabrication: Microprocessors design and
fabrication, MEMS, Soft-Lithography |
| Courses Taken sorted by Field / Department |
| Field | Department | Course Name | Course Number and Reference | |
| Chemistry | General
and Inorganic Chemistry I & Lab General Chemistry and Reactivity Organic Chemistry | [CHEM 125,126] [CHEM 130] [CHEM 210, 211] | ||
| Biology | Immunology | [BIO 436] | ||
| Math |
Calculus I Calculus II Calculus III Differential Eq. Honors Linear Algebra, Vector Spaces and Matrix Theory Probability Intro Adaptive Systems |
[MATH 115] [MATH 116] [MATH 215] [MATH 216] [MATH 419] [MATH 425] [MATH 550] | ||
| Physics | General Physics I & Lab General Physics II & Lab Quantum Mechanics & Modern Particle Physics Physics of Nonlinear Dynamical Systems | [PHYS
140, 141] [PHYS 240,241] [PHYS 390] [PHYS 413] | ||
| Statistics | Statistics and Data
Analysis Probability Prob. Methods in Engineering | [STAT 402] [MATH 425] [AERO 453] | ||
| Anatomy and Cell Biology | Cellular Biotechnology Molecular Cell Biology | [ANAT 504] [ANAT 530] | ||
| Biological Chemistry |
BioInformatics Seminar Biochemistry Lab Survey in BioInformatics Protein Structure DNA & Nucleic Acids Gene Expression Enzyme Kinetics Catalysis Critical Analysis (equivalence) Biochemistry Research (lab rotation, HHMI at UM) Signal Transduction, Regulation, and Development | [BIOCHEM 511] [BIOCHEM 516] [BIOCHEM 526] [BIOCHEM 570] [BIOCHEM 571] [BIOCHEM 572] [BIOCHEM 573] [BIOCHEM 574] ([BIOCHEM 597]) [BIOCHEM 600] [BIOCHEM 701] | ||
| Cell and Developmental Biology | Organogenesis of Complex Tissues I:
Gut Organogenesis of Complex Tissues II: Neural Crest Organogenesis of Complex Tissues III: Skeletal Muscle | [CDB 680] [CDB 681] [CDB 682] | ||
| Human Genetics | Gene Structure and Regulation | [HGEN 541] | ||
| MicroBiology and Immunology |
Cellular Biotechnology Microbial. Genetics Microbial Physiology and metabolism Cancer Cell Biology Molecular and Cellular Viral Pathogenesis DNA Tumor Viruses RetroViruses Graduate Seminar |
[MICROBIO 504] [MICROBIO 604] [MICROBIO 606] [MICROBIO 553] [MICROBIO 615] [MICROBIO 616] [MICROBIO 617] [MICROBIO 812] | ||
| NeuroScience |
NeuroBiology of Learning Cogn. & Integr. |
[NEUROSCI 615] [NEUROSCI 616] | ||
| Aerospace Engineering | Prob. Methods in Engineering Spacecraft Technology Space Plasma Physics | [AERO 453] [AERO 582] [AERO 597] | ||
| Atmospheric, Oceanographic, and Space Science Engineering | Space System Design for Environmental
Observation Space System Design for Space Sciences Space Plasma Physics | [AOSS 465] [AOSS 556] [AOSS 597] | ||
| BioMedical Engineering | BioMedical Materials MRI Magnetic Resonance Imaging Ethics & Enterprise Micro- and Nano-Technology for Biology Biomedical Engineering Research Biomedical Engineering Graduate Seminar | [BIOMED
410] [BIOMED 483] [BIOMED 550] [BIOMED 599-105] [BIOMED 590] [BIOMED 800] | ||
| Electrical Engineering and Computer Science |
Circuits [EE] |
Circuit Analysis |
[EECS 216:EECS
210+211] | |
| Hardware Design and
Architecture [EE/CE] |
Logic Design |
[EECS 270] | ||
| Programming [CS/CE] |
ANSI C Programming & Data Str. |
[EECS 280] | ||
| Technical Applications [CS/CE] |
Operating Systems |
[EECS 482] | ||
| Theory [CS/CE] |
Discrete Structures |
[EECS 303] | ||
| Engineering Communication & Research | Technical Writing and Communication Genetic Programming Intelligent Agents Plan Recognition Cognitive Modeling Software Engineering Technical Seminars |
[TECH-COMM 498] | ||
| Material Science Engineering | Fundamentals of Material
Science Engineering Biomedical Materials and Applications | [MSE 250] [MSE 410] | ||
| Mechanical Engineering | (Intro to Robotics)* | ([ME 567])* | ||
| Nuclear Engineering | Elements of Nuclear Engineering | [NE&RS 400] | ||
| Complex Systems[PSCS] | Adaptive Systems Empirical analysis of Non-Linear Systems Computer Modeling Dynamical Complex Systems | [PSCS 510] [PSCS 520] [PSCS 530] [PSCS 541] | ||
| Applied Physics | Applied Physics Grad Seminar | [APHYS 514] | ||
| Kinesiology | Legal Aspects of Sport Seminar in Motor Control Exercise Physiology and Nutrition Current Issues in Kinesiology Philosophy of Science and Research in Kinesiology Independent Study on Muscle Growth, Strength, and Training Strategies | [KIN 503] [KIN 520] [MVS 542] [KIN 610] [KIN 615] [KIN 682] | ||
| BioPhysics | Electrical BioPhysics and Cellular
Neurophysiology Enzymes, Proteins, and Nucleic Acids | [BIOPHYS 417] [BIOPHYS 570, 571] | ||
| Philosophy | General Issues in Bio-Ethics Space, Time & Einstein's Relativity Ethical Analysis History of Ethics Philosophy of Science Current Philosophy - The Self Philosophy of Language | [PHIL 1x1,
2x1] [PHIL 356] [PHIL 423] [PHIL 429] [PHIL 433] [PHIL 602] [PHIL 611] [PHIL 615] | ||
| Economics | Micro-Economic Theory | [ECON 501] | ||
| Psychology | General Adaptive Systems Psychology Graduate Proseminar Master's Thesis Project Neural Models Personality Psychology Cognitive Modeling | [PSYC 2x1] [PSYC 594] [PSYC 600] [PSYC 619] [PSYC 640] [PSYC 653] [PSYC 808] | ||
| Other | Autocad
13 Political Science History English Composition | [ENGR 1x1] [POLSCI 2x1] [HIST 1x1] [ENGL 1x1, ENGL 125] | ||
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*note: These 3 classes were attended but not taken for credit.