Chemistry Subset of Harris Links

 

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Larry P. Taylor, Ph.D

aka "Harris"

 

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Jump To:   Alchemy   Data Analysis  Modeling   Nomenclature  Organizations  Peptides  Molecular Biology

Chemistry

Adi Chemistry - http://www.adichemistry.com/
Alchemy Project - http://tuvalu.santafe.edu/~walter/AlChemy/alchemy.html
Animated Gas Lab (NASA) - https://www.grc.nasa.gov/WWW/K-12/airplane/Animation/frglab.html
Atomic Orbital Visualizations - http://daugerresearch.com/orbitals/index.shtml
Bio-link - https://www.bio-link.org/
Chem Sources - http://www.chemsources.com/
Chem4Kids - http://www.chem4kids.com/
ChemDictionary - https://chemdictionary.org/
Chemguide - http://www.chemguide.co.uk/
Chemical Education Exchange - https://www.chemedx.org/
Chemical Forums - https://www.chemicalforums.com/
Chemistry Behind Cleaning - https://www.bbcleaningservice.com/office/chemistry-behind-cleaning.html
Chemistry Best of the Web - https://botw.org/top/Science/Chemistry/
Chemistry Dictionary (YOGI'S) - http://environmentalchemistry.com/yogi/chemistry/dictionary/
Chemistry Ebooks - http://www.freebookcentre.net/Chemistry/Chemistry-Books-Online.html
Chemistry Explorer - http://www.webref.org/chemistry/chemistry.htm
Chemistry Games - http://www.mansfieldct.org/schools/mms/staff/hand/chemgames.htm
Chemistry Historical Perspective - http://www.3rd1000.com/history/contents.htm
Chemistry LibreTexts - https://chem.libretexts.org/
Chemistry Matters - https://www.gpb.org/chemistry-matters
Chemistry Place - https://media.pearsoncmg.com/bc/abp/thechemistryplace/
Chemistry Study Cards - http://www.chemmybear.com/stdycrds.html
Chemistry Trivia Quiz - https://www.thoughtco.com/chemistry-trivia-quiz-4060974
ChemPuter (Sheffield) - https://winter.group.shef.ac.uk/chemputer/
Chocolate - http://faculty.washington.edu/chudler/choco.html
Classic Chemistry - http://web.lemoyne.edu/~giunta/index.html
Combinatorial Chemistry Notes - http://www.screening-compounds.com/index.html
Combinatorial Chemistry - http://www.combinatorial.com/
Cooking Science - https://www.exploratorium.edu/cooking/index.html
Creative Chemistry - https://www.creative-chemistry.org.uk/
Database- Materials Info - http://www.matweb.com/
Database- Minerology - http://webmineral.com/
Database- NIST Chemistry WebBook - https://webbook.nist.gov/chemistry/
Database- Plastics (IDES) - https://www.ulprospector.com/en/na
eMolecules - https://www.emolecules.com/
Environmental Chemistry - https://environmentalchemistry.com/
EPA Emergency Response - https://www.epa.gov/emergency-response
General Chemistry - https://antoine.frostburg.edu/chem/senese/101/index.shtml
Mad Science - https://graysci.com/
Mark Rosengarten - http://markrosengarten.com/
Mr. Kent's - http://www.kentchemistry.com/
Name-Reaction - http://www.name-reaction.com/
NetBiochem - https://library.med.utah.edu/NetBiochem/NetWelco.htm
Orbitals-Grand Table - http://www.orbitals.com/orb/orbtable.htm
Orbitals-Hydrogenlike - http://www.uky.edu/~holler/html/orbitals_2.html
Orbitron-Gallery of Atomic Orbitals - https://winter.group.shef.ac.uk/orbitron/admin/references.html
Organic Chemistry Portal - https://www.organic-chemistry.org/
Organic Structure Workbook - https://www3.nd.edu/~smithgrp/structure/workbook.html
Organoboron Chemistry - https://organoborons.com/
Periodic Table-Biochemical Spiral - http://eawag-bbd.ethz.ch/periodic/spiral.html
Periodic Table-Comics - http://www.uky.edu/Projects/Chemcomics/
Periodic Table-Database (Elements) - http://www.elementsdatabase.com/
Periodic Table-Database (Meta) - https://www.meta-synthesis.com/webbook/35_pt/pt_database.php
Periodic Table-Dhaatu - http://www.dhaatu.com/
Periodic Table-Dynamic - https://ptable.com/
Periodic Table-Elements - https://periodictable.com/
Periodic Table-Gray - https://theodoregray.com/PeriodicTable/
Periodic Table-Internet - http://www.chemicalelements.com/
Periodic Table-Los Alamos - https://periodic.lanl.gov/index.shtml
Periodic Table-Royal Society - https://www.rsc.org/periodic-table
Periodic Table-Scientific American - https://www.scientificamerican.com/article/chemistry-the-elements-revealed-interactive-periodic-table/
Periodic Table-Tech - https://fios.verizon.com/beacon/periodic-tech-table/
Periodic Table-WebElements - https://www.webelements.com/
Separations Now - https://analyticalscience.wiley.com/topic/browse/separation
Silly or Unusual Names - http://www.chm.bris.ac.uk/sillymolecules/sillymols2.htm
Software-AOCR - http://www.aocr.ch/index.html
Software-ChemBuddy - https://www.chembuddy.com/
Software-ChemDoodle - https://www.chemdoodle.com/
Software-Chemical Thesaurus - http://www.chemthes.com/
Software-Chemistry (Rolf's) - http://www.claessen.net/chemistry/soft_en.html
Software-Chemware - http://chemware.co.nz/
Software-CompuChem - http://www.compuchem.com/
Software-Computational Net - http://www.ccl.net/index.shtml
Software-Cranium - http://www.molecularknowledge.com/Cranium/cranium.htm
Software-DynaFit - http://www.biokin.com/
Software-MarvinSketch - https://chemaxon.com/products/marvin
Software-Sicyon - http://www.sicyon.com/
Software-Students' Guide - https://sites.google.com/site/chemistryfreeware/home
Software-WinPLT - https://www2.chem.wisc.edu/areas/reich/plt/winplt.htm
Spectroscopy Now - https://analyticalscience.wiley.com/topic/browse/spectroscopy
Tools-Orbitron - https://winter.group.shef.ac.uk/orbitron/
Tools-Sigma - https://www.sigmaaldrich.com/technical-service-home/web-tool-box.html
Trimark Publications - https://www.trimarkpublications.com/
Tutor- Julian Chemistry Singapore - https://julianchemistry.com/
Tutor-Chemistry Guru - https://chemistryguru.com.sg/
Tutorial-VSEPR - https://winter.group.shef.ac.uk/vsepr/howtodoit.html
Web Guide - http://science.searchbeat.com/chemistry.htm
Wikipedia-Chemistry Portal - https://en.wikipedia.org/wiki/Portal:Chemistry
World of Chemistry - https://scienceworld.wolfram.com/chemistry/
Yeah Chemistry - https://yeahchemistry.com/

Chemistry-Alchemy

Ages Of Alchemy - http://icanseefar.tripod.com/home.html
Alchemical Emblems - http://www.levity.com/alchemy/galleries.html
Alchemy Web Ring - https://www.alchemylab.com/webring.htm
Alchemy - http://www.levity.com/alchemy/index.html
History of Chemistry - https://homepages.bluffton.edu/~bergerd/chem/chemhist.html
Software-Merlin's Academy - http://www.synapses.co.uk/alchemy/

Chemistry-Data Analysis

Harvard Biomedical Data Management - https://datamanagement.hms.harvard.edu/
KDNuggets Data Mining - https://www.kdnuggets.com/
Probability - http://www.cut-the-knot.org/probability.shtml
Software-3D Grapher - http://www.romanlab.com/3dg/
Software-CoHort - http://www.cohort.com/
Software-FitAll - http://www.fitall.com/
Software-Graph Pad - https://www.graphpad.com/
Software-KaleidaGraph - https://www.synergy.com/
Software-Mathematica - https://www.wolfram.com/
Software-MathWorks - https://www.mathworks.com/
Software-Origin - https://www.originlab.com/
Software-R for Statistical Computing - https://www.r-project.org/
Software-SAS - https://www.sas.com/en_us/home.html
Software-SciGraphica - http://scigraphica.sourceforge.net/
Software-Spotfire - https://www.tibco.com/products/tibco-spotfire
Software-STEPS - http://www.stats.gla.ac.uk/steps/base.html
Tutorial-Excel Graphs - https://projects.ncsu.edu/labwrite//res/gt/gt-menu.html
Tutorial-Making Tables & Figures - http://abacus.bates.edu/~ganderso/biology/resources/writing/HTWtablefigs.html

Chemistry-Journals

ACS Publications - https://pubs.acs.org/
BioScience Talks - http://bioscience-talks.aibs.org/
BioScience - https://academic.oup.com/bioscience
Chemical Abstracts - https://www.cas.org/
Chemical Week - https://chemweek.com/cw/
Chemistry in Australia - http://chemaust.raci.org.au/
Chemistry World - https://www.chemistryworld.com/
HazMat - https://hazmatmag.com/
PLoS Computational Biology - https://journals.plos.org/ploscompbiol/
R&D - https://www.rdworldonline.com/

Chemistry-Modeling

BioExplorer - https://www.bioexplorer.net/
Birkbeck Institute of Structural & Molecular Bioloy - http://www.ismb.lon.ac.uk/
Computational Chemistry List - http://www.ccl.net/chemistry/
Crystallographic Resources - http://xtal.uvm.edu/
Cytokines (Cells Talk) - http://www.cells-talk.com/
Database-American Mineralogist - http://rruff.geo.arizona.edu/AMS/amcsd.php
Database-Cambridge - https://www.ccdc.cam.ac.uk/
Database-CATH (UCL) - http://www.cathdb.info/
Database-Crystallography Open - http://www.crystallography.net/cod/
Database-Fire Annotated Residues - http://firedb.bioinfo.cnio.es/Php/FireDB.php
Database-IntAct - https://www.ebi.ac.uk/intact/main.xhtml
Database-Interacting Proteins (DIP) - https://dip.doe-mbi.ucla.edu/dip/Main.cgi
Database-Minerals by Chemical Composition - http://webmineral.com/chemical.shtml
Database-MMDB Structures - https://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
Database-Nucleic Acid (NDB) - http://ndb-mirror-2.rutgers.edu/index.html
Database-PDB (RCSB) - https://www.rcsb.org/
Database-PDB Clean FIles - https://swift.cmbi.umcn.nl/gv/service/judith/CLEANT/
Database-PDB sum - https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=index.html
Database-Peptaibol - http://peptaibol.cryst.bbk.ac.uk/home.shtml
Database-Pfam - http://pfam.xfam.org/
Database-PIR (UniProt) - https://www.uniprot.org/
Database-Proteins in Membranes - https://opm.phar.umich.edu/
Database-Zeolite Structures - http://www.iza-structure.org/databases/
DNA Animations - http://www.dnahelix.com/
Dopamine D4 - https://www.biopsychiatry.com/d4.htm
FGF Kinemages - http://www-personal.umich.edu/~lpt/fgf/fgf.htm
Geometry in Action - https://www.ics.uci.edu/~eppstein/geom.html
History of Molecular Visualization - http://www.umass.edu/microbio/rasmol/history.htm
Macromolecular Museum - http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/gallery.htm
Miramodus Models - https://www.miramodus.com/
Modeling (Mosberg) - http://mosberglab.phar.umich.edu/
Models-Molecular Models Co - http://www.molecularmodelscompany.com/Home.aspx
Models-Molymod - https://www.indigoinstruments.com/molecular_models/
Molecular Expressions - https://micro.magnet.fsu.edu/index.html
PPS-Home - http://pps9900.cryst.bbk.ac.uk/
PPS-Home99 - http://pps99.cryst.bbk.ac.uk/index.html
Protein Folding Lab (U of MI) - http://www.umich.edu/~protein/index.html
Reciprocal Net - http://www.reciprocalnet.org/index.html
Software Database (Structural Biology) - http://www.ks.uiuc.edu/Development/biosoftdb/biosoft.cgi
Software-ArgusLab - http://www.arguslab.com/arguslab.com/Welcome.html
Software-AutoDock - http://autodock.scripps.edu/
Software-BAM - http://dunbrack.fccc.edu/BAM/
Software-Bio3D - http://thegrantlab.org/bio3d/index.php
Software-BioByte - http://www.biobyte.com/index.html
Software-BioCoRE - http://www.ks.uiuc.edu/Research/biocore/
Software-Biodesigner - https://www.pirx.com/biodesigner/index.shtml
Software-Bodil - http://users.abo.fi/bodil
Software-Centara - https://www.certara.com/
Software-Chime Resources (UMass) - http://www.umass.edu/microbio/chime/index.html
Software-Chimera - http://www.cgl.ucsf.edu/chimera/index.html
Software-Chirality - http://petitjeanmichel.free.fr/itoweb.petitjean.html
Software-Cn3D - https://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml
Software-Diamond - http://www.crystalimpact.com/diamond/
Software-Dunbrack Lab - http://dunbrack.fccc.edu/Home.php
Software-Folding@Home - https://foldingathome.org/
Software-Jmol - http://jmol.sourceforge.net/
Software-Kinemage - http://kinemage.biochem.duke.edu/
Software-MathMol (NYU) - http://www.nyu.edu/pages/mathmol/
Software-Molecular Surface (Sanner) - http://mgl.scripps.edu/people/sanner/html/msms_home.html
Software-Molecular Universe - http://www.themolecularuniverse.com/data/articles/tableofcontents/index.html
Software-Molecular Workbench - http://mw.concord.org/modeler/
Software-MolSlides - http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/molview/index.htm
Software-MolSoft - http://www.molsoft.com/index.html
Software-NOC - http://noch.sourceforge.net/
Software-Open Babel - http://openbabel.org/wiki/Main_Page
Software-OpenEye - https://www.eyesopen.com/
Software-Orbital Viewer - http://www.orbitals.com/orb/ov.htm
Software-PLATON - https://www.platonsoft.nl/platon/
Software-PyMOL - https://pymol.org/2/
Software-QuteMol - http://qutemol.sourceforge.net/
Software-Rasmol Classic - http://www.umass.edu/microbio/rasmol/index2.htm
Software-RasMol Open - http://openrasmol.org/
Software-Raster3D - http://skuld.bmsc.washington.edu/raster3d/html/raster3d.html
Software-RasTop - http://www.geneinfinity.org/rastop/
Software-Schrödinger - https://www.schrodinger.com/
Software-Serena - http://www.serenasoft.com/
Software-Shape - http://www.shapesoftware.com/00_Website_Homepage/
Software-Structural Biology - http://www.ks.uiuc.edu/Development/biosoftdb/
Software-SweetMollyGrace - http://rodomontano.altervista.org/engSweetMG.php
Software-TRITON - http://www.ncbr.muni.cz/triton/triton.html
Software-VENUS - http://fujioizumi.verse.jp/visualization/VENUS.html
Software-VESTA - http://jp-minerals.org/en/
Software-Vienna RNA Secondary Structure - https://www.tbi.univie.ac.at/RNA/
Software-Viewmol - http://viewmol.sourceforge.net/
Software-Vigyaan - http://www.vigyaancd.org/
Software-VMD (Beckman) - http://www.ks.uiuc.edu/Research/vmd/
Software-Wavefunction - https://www.wavefun.com/
Software-YASARA - http://www.yasara.org/
Structures Just For Chemists - https://www.biopsychiatry.com/structures/
Structures-Cool Molecules - https://www.stolaf.edu//depts/chemistry/mo/struc/
Structures-HIC-Up - http://xray.bmc.uu.se/hicup/
Structures-JenaLib - http://jenalib.leibniz-fli.de/IMAGE.html
Structures-Ketamine - http://www.pitt.edu/~soriano/models/ketamine/ketamine.html
Structures-MathMol - http://www.nyu.edu/pages/mathmol/library/
Structures-Membrane Proteins - https://blanco.biomol.uci.edu/mpstruc/
Structures-MSD Ligands - https://www.ebi.ac.uk/pdbe-srv/pdbechem/
Structures-PubChem - https://pubchem.ncbi.nlm.nih.gov/
Structures-World of Molecules - https://www.worldofmolecules.com/
Tools-CBS Prediction - https://services.healthtech.dtu.dk/
Tools-DART - https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps
Tools-Dockground - http://dockground.compbio.ku.edu/
Tools-Docking (GrammX) - http://vakser.compbio.ku.edu/resources/gramm/grammx
Tools-Fold Recognition (UCLA-DOE) - https://www.doe-mbi.ucla.edu/
Tools-Peptide Patterns (PIR) - https://proteininformationresource.org/pirwww/
Tools-Phyre - http://www.sbg.bio.ic.ac.uk/~phyre2/html/page.cgi?id=index
Tools-PolyView 3D - http://polyview.cchmc.org/polyview3d.html
Tools-PRINTS - http://130.88.97.239/PRINTS/index.php
Tools-Proteopedia - http://proteopedia.org/wiki/index.php/Main_Page
Tools-SBASE Domain Library - http://pongor.itk.ppke.hu/protein/sbase.html#/sbase_summary
Tools-Signal Peptide Server - http://www.cbs.dtu.dk/services/SignalP/
Tools-SWISS-MODEL - https://swissmodel.expasy.org/
Tools-VAST - https://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml
Topology Cartoons-Modules - http://www.bork.embl-heidelberg.de/Modules/extra.html
Tutorial-Antibody Structure - http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/exhibits.htm
Tutorial-Comparitive Protein Modeling - https://swissmodel.expasy.org/course/course-index.htm
Tutorial-Crystallography - http://webmineral.com/crystall.shtml
Tutorial-DNA Structure - http://www.umass.edu/microbio/chime/dna/index1.htm
Tutorial-Knots in Proteins - http://www.umass.edu/microbio/chime/knots/index.htm
Tutorial-MathMol Hypermedia - http://www.nyu.edu/pages/mathmol/textbook/
Tutorial-Membranes - https://library.med.utah.edu/NetBiochem/membrane.htm
Tutorial-Modeling (CMBI) - https://swift.cmbi.umcn.nl/teach/courses/index.html
Tutorial-MOPAC - http://www.ccl.net/cca/documents/dyoung/topics-orig/mopac.html
Tutorial-Opioid Receptors - https://www.opioids.com/receptors/
Tutorial-RasMol - http://www.umass.edu/microbio/rasmol/rastut.htm
Tutorial-VMD - http://www.ks.uiuc.edu/Research/vmd/vmd-1.6/ug/node11.html
VSEPR (Dupuis & Berland) - https://www.faidherbe.org/site/cours/dupuis/vseprev.htm
VSEPR-Shapes of Molecules - http://www.chemistry.wustl.edu/~edudev/Vsepr/

Jump To: Chemistry    Data Analysis  Modeling    Organizations  Peptides  Molecular Biology

Chemistry-Alchemy

Ages Of Alchemy - http://icanseefar.tripod.com/home.html
Alchemical Emblems - http://www.levity.com/alchemy/galleries.html
Alchemy Web Ring - https://www.alchemylab.com/webring.htm
Alchemy - http://www.levity.com/alchemy/index.html
History of Chemistry - https://homepages.bluffton.edu/~bergerd/chem/chemhist.html
Software-Merlin's Academy - http://www.synapses.co.uk/alchemy/

Jump To: Chemistry    Alchemy   Modeling   Nomenclature  Organizations  Peptides  Molecular Biology

Chemistry-Data Analysis

Harvard Biomedical Data Management - https://datamanagement.hms.harvard.edu/
KDNuggets Data Mining - https://www.kdnuggets.com/
Probability - http://www.cut-the-knot.org/probability.shtml
Software-3D Grapher - http://www.romanlab.com/3dg/
Software-CoHort - http://www.cohort.com/
Software-FitAll - http://www.fitall.com/
Software-Graph Pad - https://www.graphpad.com/
Software-KaleidaGraph - https://www.synergy.com/
Software-Mathematica - https://www.wolfram.com/
Software-MathWorks - https://www.mathworks.com/
Software-Origin - https://www.originlab.com/
Software-R for Statistical Computing - https://www.r-project.org/
Software-SAS - https://www.sas.com/en_us/home.html
Software-SciGraphica - http://scigraphica.sourceforge.net/
Software-Spotfire - https://www.tibco.com/products/tibco-spotfire
Software-STEPS - http://www.stats.gla.ac.uk/steps/base.html
Tutorial-Excel Graphs - https://projects.ncsu.edu/labwrite//res/gt/gt-menu.html
Tutorial-Making Tables & Figures - http://abacus.bates.edu/~ganderso/biology/resources/writing/HTWtablefigs.html

Jump To:  Chemistry   Alchemy   Data Analysis    Nomenclature  Organizations  Peptides  Molecular Biology

Chemistry-Modeling

BioExplorer - https://www.bioexplorer.net/
Birkbeck Institute of Structural & Molecular Bioloy - http://www.ismb.lon.ac.uk/
Computational Chemistry List - http://www.ccl.net/chemistry/
Crystallographic Resources - http://xtal.uvm.edu/
Cytokines (Cells Talk) - http://www.cells-talk.com/
Database-American Mineralogist - http://rruff.geo.arizona.edu/AMS/amcsd.php
Database-Cambridge - https://www.ccdc.cam.ac.uk/
Database-CATH (UCL) - http://www.cathdb.info/
Database-Crystallography Open - http://www.crystallography.net/cod/
Database-Fire Annotated Residues - http://firedb.bioinfo.cnio.es/Php/FireDB.php
Database-IntAct - https://www.ebi.ac.uk/intact/main.xhtml
Database-Interacting Proteins (DIP) - https://dip.doe-mbi.ucla.edu/dip/Main.cgi
Database-Minerals by Chemical Composition - http://webmineral.com/chemical.shtml
Database-MMDB Structures - https://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
Database-Nucleic Acid (NDB) - http://ndb-mirror-2.rutgers.edu/index.html
Database-PDB (RCSB) - https://www.rcsb.org/
Database-PDB Clean FIles - https://swift.cmbi.umcn.nl/gv/service/judith/CLEANT/
Database-PDB sum - https://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=index.html
Database-Peptaibol - http://peptaibol.cryst.bbk.ac.uk/home.shtml
Database-Pfam - http://pfam.xfam.org/
Database-PIR (UniProt) - https://www.uniprot.org/
Database-Proteins in Membranes - https://opm.phar.umich.edu/
Database-Zeolite Structures - http://www.iza-structure.org/databases/
DNA Animations - http://www.dnahelix.com/
Dopamine D4 - https://www.biopsychiatry.com/d4.htm
FGF Kinemages - http://www-personal.umich.edu/~lpt/fgf/fgf.htm
Geometry in Action - https://www.ics.uci.edu/~eppstein/geom.html
History of Molecular Visualization - http://www.umass.edu/microbio/rasmol/history.htm
Macromolecular Museum - http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/gallery.htm
Miramodus Models - https://www.miramodus.com/
Modeling (Mosberg) - http://mosberglab.phar.umich.edu/
Models-Molecular Models Co - http://www.molecularmodelscompany.com/Home.aspx
Models-Molymod - https://www.indigoinstruments.com/molecular_models/
Molecular Expressions - https://micro.magnet.fsu.edu/index.html
PPS-Home - http://pps9900.cryst.bbk.ac.uk/
PPS-Home99 - http://pps99.cryst.bbk.ac.uk/index.html
Protein Folding Lab (U of MI) - http://www.umich.edu/~protein/index.html
Reciprocal Net - http://www.reciprocalnet.org/index.html
Software Database (Structural Biology) - http://www.ks.uiuc.edu/Development/biosoftdb/biosoft.cgi
Software-ArgusLab - http://www.arguslab.com/arguslab.com/Welcome.html
Software-AutoDock - http://autodock.scripps.edu/
Software-BAM - http://dunbrack.fccc.edu/BAM/
Software-Bio3D - http://thegrantlab.org/bio3d/index.php
Software-BioByte - http://www.biobyte.com/index.html
Software-BioCoRE - http://www.ks.uiuc.edu/Research/biocore/
Software-Biodesigner - https://www.pirx.com/biodesigner/index.shtml
Software-Bodil - http://users.abo.fi/bodil
Software-Centara - https://www.certara.com/
Software-Chime Resources (UMass) - http://www.umass.edu/microbio/chime/index.html
Software-Chimera - http://www.cgl.ucsf.edu/chimera/index.html
Software-Chirality - http://petitjeanmichel.free.fr/itoweb.petitjean.html
Software-Cn3D - https://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml
Software-Diamond - http://www.crystalimpact.com/diamond/
Software-Dunbrack Lab - http://dunbrack.fccc.edu/Home.php
Software-Folding@Home - https://foldingathome.org/
Software-Jmol - http://jmol.sourceforge.net/
Software-Kinemage - http://kinemage.biochem.duke.edu/
Software-MathMol (NYU) - http://www.nyu.edu/pages/mathmol/
Software-Molecular Surface (Sanner) - http://mgl.scripps.edu/people/sanner/html/msms_home.html
Software-Molecular Universe - http://www.themolecularuniverse.com/data/articles/tableofcontents/index.html
Software-Molecular Workbench - http://mw.concord.org/modeler/
Software-MolSlides - http://www.umass.edu/microbio/chime/pe_beta/pe/protexpl/molview/index.htm
Software-MolSoft - http://www.molsoft.com/index.html
Software-NOC - http://noch.sourceforge.net/
Software-Open Babel - http://openbabel.org/wiki/Main_Page
Software-OpenEye - https://www.eyesopen.com/
Software-Orbital Viewer - http://www.orbitals.com/orb/ov.htm
Software-PLATON - https://www.platonsoft.nl/platon/
Software-PyMOL - https://pymol.org/2/
Software-QuteMol - http://qutemol.sourceforge.net/
Software-Rasmol Classic - http://www.umass.edu/microbio/rasmol/index2.htm
Software-RasMol Open - http://openrasmol.org/
Software-Raster3D - http://skuld.bmsc.washington.edu/raster3d/html/raster3d.html
Software-RasTop - http://www.geneinfinity.org/rastop/
Software-Schrödinger - https://www.schrodinger.com/
Software-Serena - http://www.serenasoft.com/
Software-Shape - http://www.shapesoftware.com/00_Website_Homepage/
Software-Structural Biology - http://www.ks.uiuc.edu/Development/biosoftdb/
Software-SweetMollyGrace - http://rodomontano.altervista.org/engSweetMG.php
Software-TRITON - http://www.ncbr.muni.cz/triton/triton.html
Software-VENUS - http://fujioizumi.verse.jp/visualization/VENUS.html
Software-VESTA - http://jp-minerals.org/en/
Software-Vienna RNA Secondary Structure - https://www.tbi.univie.ac.at/RNA/
Software-Viewmol - http://viewmol.sourceforge.net/
Software-Vigyaan - http://www.vigyaancd.org/
Software-VMD (Beckman) - http://www.ks.uiuc.edu/Research/vmd/
Software-Wavefunction - https://www.wavefun.com/
Software-YASARA - http://www.yasara.org/
Structures Just For Chemists - https://www.biopsychiatry.com/structures/
Structures-Cool Molecules - https://www.stolaf.edu//depts/chemistry/mo/struc/
Structures-HIC-Up - http://xray.bmc.uu.se/hicup/
Structures-JenaLib - http://jenalib.leibniz-fli.de/IMAGE.html
Structures-Ketamine - http://www.pitt.edu/~soriano/models/ketamine/ketamine.html
Structures-MathMol - http://www.nyu.edu/pages/mathmol/library/
Structures-Membrane Proteins - https://blanco.biomol.uci.edu/mpstruc/
Structures-MSD Ligands - https://www.ebi.ac.uk/pdbe-srv/pdbechem/
Structures-PubChem - https://pubchem.ncbi.nlm.nih.gov/
Structures-World of Molecules - https://www.worldofmolecules.com/
Tools-CBS Prediction - https://services.healthtech.dtu.dk/
Tools-DART - https://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi?cmd=rps
Tools-Dockground - http://dockground.compbio.ku.edu/
Tools-Docking (GrammX) - http://vakser.compbio.ku.edu/resources/gramm/grammx
Tools-Fold Recognition (UCLA-DOE) - https://www.doe-mbi.ucla.edu/
Tools-Peptide Patterns (PIR) - https://proteininformationresource.org/pirwww/
Tools-Phyre - http://www.sbg.bio.ic.ac.uk/~phyre2/html/page.cgi?id=index
Tools-PolyView 3D - http://polyview.cchmc.org/polyview3d.html
Tools-PRINTS - http://130.88.97.239/PRINTS/index.php
Tools-Proteopedia - http://proteopedia.org/wiki/index.php/Main_Page
Tools-SBASE Domain Library - http://pongor.itk.ppke.hu/protein/sbase.html#/sbase_summary
Tools-Signal Peptide Server - http://www.cbs.dtu.dk/services/SignalP/
Tools-SWISS-MODEL - https://swissmodel.expasy.org/
Tools-VAST - https://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml
Topology Cartoons-Modules - http://www.bork.embl-heidelberg.de/Modules/extra.html
Tutorial-Antibody Structure - http://earth.callutheran.edu/Academic_Programs/Departments/BioDev/omm/exhibits.htm
Tutorial-Comparitive Protein Modeling - https://swissmodel.expasy.org/course/course-index.htm
Tutorial-Crystallography - http://webmineral.com/crystall.shtml
Tutorial-DNA Structure - http://www.umass.edu/microbio/chime/dna/index1.htm
Tutorial-Knots in Proteins - http://www.umass.edu/microbio/chime/knots/index.htm
Tutorial-MathMol Hypermedia - http://www.nyu.edu/pages/mathmol/textbook/
Tutorial-Membranes - https://library.med.utah.edu/NetBiochem/membrane.htm
Tutorial-Modeling (CMBI) - https://swift.cmbi.umcn.nl/teach/courses/index.html
Tutorial-MOPAC - http://www.ccl.net/cca/documents/dyoung/topics-orig/mopac.html
Tutorial-Opioid Receptors - https://www.opioids.com/receptors/
Tutorial-RasMol - http://www.umass.edu/microbio/rasmol/rastut.htm
Tutorial-VMD - http://www.ks.uiuc.edu/Research/vmd/vmd-1.6/ug/node11.html
VSEPR (Dupuis & Berland) - https://www.faidherbe.org/site/cours/dupuis/vseprev.htm
VSEPR-Shapes of Molecules - http://www.chemistry.wustl.edu/~edudev/Vsepr/

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Chemistry-Nomenclature

14 Rules - https://egpat.com/blog/14-rules-you-should-know-to-write-IUPAC-name-of-organic-compounds
Ionic and Covalent Compounds - https://www.angelo.edu/faculty/kboudrea/general/formulas_nomenclature/Formulas_Nomenclature.htm
IUPAC Compendium of Chemical Terminology - https://goldbook.iupac.org/
IUPAC Naming - https://www.iupacnaming.com/
IUPAC Nomenclature - https://www.qmul.ac.uk/sbcs/iupac/
Monosaccharides - https://www.biologydiscussion.com/biochemistry/carbohydrates-biochemistry/monosaccharides-nomenclature-and-chemical-properties/72681
Nomenclature (NSU) - http://sst.nsu.edu/chm221/notes/003lec2.htm
Nomenclature (Purdue) - http://chemed.chem.purdue.edu/genchem/topicreview/bp/ch2/names.html
Organic (IUPAC) - http://www.chem.uiuc.edu/GenChemReferences/nomenclature_rules.html
Organic - https://www2.chemistry.msu.edu/faculty/reusch/VirtTxtJml/nomen1.htm
Wikipedia - https://en.wikipedia.org/wiki/Chemical_nomenclature

Jump To: Chemistry   Alchemy   Data Analysis    Modeling    Organizations  Peptides  Molecular Biology

Chemistry-Organizations

Alpha Chi Sigma - https://www.alphachisigma.org/
American Association for Clinical Chemistry - https://www.aacc.org/
American Association of Chemistry Teachers - https://teachchemistry.org/
American Chemical Society - https://www.acs.org/content/acs/en.html
American Chemistry Council - https://www.americanchemistry.com/default.aspx
American Crystallographic Assoc - https://www.amercrystalassn.org/
American Institute of Chemical Engineers - https://www.aiche.org//
American Oil Chemists Society - https://www.aocs.org/?SSO=True
American Peptide Society - https://www.americanpeptidesociety.org/
American Society for Mass Spectrometry - https://asms.org/
American Society of Brewing Chemists - https://www.asbcnet.org/Pages/default.aspx
Australian Peptide Association - http://www.ozpeptide.org/
Biochemical Society - http://www.biochemistry.org/
Boulder Peptide Symposium - https://www.boulderpeptide.org/
British Peptide Society - http://pepsoc.uk/
Canadian Society for Chemistry - https://www.cheminst.ca/about/about-csc/
Chemical Educational Foundation - https://www.chemed.org/
Clinical Peptide Society - https://clinicalpeptidesociety.com/
Council for Chemical Research - http://ccrhq.org/
Electrochemical Society - https://www.electrochem.org/ecs-blog/interface-summer-issue/
EuChemS - https://www.euchems.eu/
European Peptide Society - https://www.eurpepsoc.com/
FACSS - https://www.facss.org/
Institute for Chemical Educaion - http://ice.chem.wisc.edu/
International Peptide Society - https://peptidesociety.org/
International Regulatory Peptide Society - http://www.regpep.org/
IUPAC - https://iupac.org/
Michigan Chemistry Council - https://www.michiganchemistry.com/
Molecular Graphics & Modeling - https://www.mgms.org/WordPress/
National Association of Chemical Distributors - https://www.nacd.com/
National Mole Day Foundation - http://www.moleday.org/
Phi Lambda Upsilon - http://philambdaupsilon.org/
Protein Society - https://www.proteinsociety.org/
Royal Society of Chemistry - https://www.rsc.org/
Science History Institute - https://www.sciencehistory.org/
Society of Cosmetic Chemists - https://www.scconline.org/
World Assoc Theoretical & Computational Chemists - http://www.watoc.net/

Jump To: Chemistry   Alchemy   Data Analysis  Modeling   Nomenclature  Organizations    Molecular Biology

Chemistry-Peptides

Antibodies Online - https://www.antibodies-online.com/
BenchSci Antibody Search - https://www.benchsci.com/
Database-Allergenic Proteins - http://fermi.utmb.edu/SDAP/sdap_ppm.html
Database-Antimicrobial Peptides - http://aps.unmc.edu/AP/main.php
Labome-ExactAntigen - https://www.labome.com/index.html
Peptide Fragmentation - http://www.matrixscience.com/help/fragmentation_help.html
ProMab - https://www.promab.com/
Software-UltraScan - http://ultrascan.aucsolutions.com/
Tools-Abie - http://www.changbioscience.com/abie/abie.html
Tools-ePitope Informatics - https://www.epitope-informatics.com/Default.htm
Tools-Mascot - http://www.matrixscience.com/search_form_select.html
Tools-PROWL - http://prowl.rockefeller.edu/
Tutorial-Deamidation of Proteins - http://www.ionsource.com/Card/Deamidation/mono0001.htm
Tutorial-Proteins - https://www2.chemistry.msu.edu/faculty/reusch/VirtTxtJml/protein2.htm

Jump To: Chemistry   Alchemy   Data Analysis  Modeling   Nomenclature  Organizations  Peptides

Molecular Biology

Bioavailability - http://www.bioability.com/
Bioinformatics (Boston) - http://www.bu.edu/bioinformatics/
Bioinformatics (EMBL) - https://www.embl.de/
Bioinformatics (Manchester) - http://bioinf.man.ac.uk/
Bioinformatics (Swiss Institute) - https://www.sib.swiss/
Bioinformatics (Weizmann) - https://bip.weizmann.ac.il/index.html
Bioinformatics - http://www.bioinformatics.org/
Biological Sciences (Cambridge) - https://www.bio.cam.ac.uk/
Biology Project (U Az) - http://www.biology.arizona.edu/
BioSpace-Biosciences Hub - https://www.biospace.com/
Biotech U - http://www.biotechu.com/
CD Genomics - https://www.cd-genomics.com/
Database-Biocatalysis & Biodegradation (MN) - http://eawag-bbd.ethz.ch/
Database-Codon Usage - http://www.kazusa.or.jp/codon/
Database-DNA (EBI) - https://www.ebi.ac.uk/
DataBase-DNA EST (NIH) - https://www.ncbi.nlm.nih.gov/genbank/dbest/
Database-Kyoto Gene Encyclopedia - https://www.genome.jp/kegg/kegg.html
Database-Medicinre & Molecular Biology - http://www.meddb.info/index.php.en
Database-miRBase - http://www.mirbase.org/
Database-Noncoding RNA - http://biobases.ibch.poznan.pl/ncRNA/
Database-Nucleic Acids - http://ndbserver.rutgers.edu/
Database-PCR Primer Sets - https://www.realtimeprimers.com/
Database-SNP - https://www.ncbi.nlm.nih.gov/snp/?db=snp
Database-WormBase (Sanger) - https://wormbase.org/
DNA Interactive - http://www.dnai.org/index.html
DNA Learning Center - https://dnalc.cshl.edu/
Entrez - https://www.ncbi.nlm.nih.gov/search/
Eugenics Archive - http://www.eugenicsarchive.org/eugenics/
European Nuclide Archive - https://www.ebi.ac.uk/ena
Genamics - http://genamics.com/
GeneMap'99 - https://www.ncbi.nlm.nih.gov/genemap/
Genetics Home Reference - https://ghr.nlm.nih.gov/
Genetics-Revolution in Progress - https://history.nih.gov/exhibits/genetics/
Genome Viewer - https://www.ncbi.nlm.nih.gov/genome/gdv/
Genome-Human - https://www.ncbi.nlm.nih.gov/genome/guide/human/
GenomeNet - https://www.genome.jp/
Genomics Glossaries - http://genomicglossaries.com/
Genomics Research - https://www.technologynetworks.com/genomics/
Human Genome Archive - https://web.ornl.gov/sci/techresources/Human_Genome/index.shtml
Human Protein Atlas - http://www.proteinatlas.org/
Human Transcript Map - https://www.ncbi.nlm.nih.gov/science96/
Just Bio - https://www.justbio.com/hosted-tools.html
Micro b Life - https://www.microblife.in/
Microbiology Gateway - https://www.caister.com/highveld/
microRNA Targets (Sloan-Kettering) - http://cbio.mskcc.org/mirnaviewer/
Molecular Biology Links (jp) - http://www.yk.rim.or.jp/~aisoai/index.html
Molecular Biology-Stockholm - https://www.su.se/mbw/
Mouse Genome Informatics - http://www.informatics.jax.org/
Protocol Online - http://www.protocol-online.org/
Rat Behavior & Biology - http://www.ratbehavior.org/
RNAi Web - http://www.rnaiweb.com/
SNPedia - https://www.snpedia.com/index.php/SNPedia
Software-ALSE (Motifs) - https://alse.cs.hku.hk/
Software-AnnHyb - http://www.bioinformatics.org/annhyb/
Software-Biosoft - http://www.premierbiosoft.com/
Software-BioTools - https://bio.tools/
Software-BIRCH - http://home.cc.umanitoba.ca/~psgendb/
Software-CLC Bio - https://digitalinsights.qiagen.com/
Software-Cytoscape - https://cytoscape.org/
Software-DNA Star - https://www.dnastar.com/
Software-DNALinux - https://www.dnalinux.com/index.php
Software-ET Viewer - http://evolution.lichtargelab.org/ETviewer
Software-Fast PCR - http://primerdigital.com/fastpcr.html
Software-Geneious - https://www.geneious.com/
Software-GeneStudio - http://www.genestudio.com/
Software-Genome Analysis - http://genome.sourceforge.net/
Software-Gepsoft - https://www.gepsoft.com/index.htm
Software-HMMER - http://hmmer.org/
Software-MB DNA Analysis - http://www.molbiosoft.de/
Software-Oligo - http://www.oligo.net/
Software-PerlPrimer - http://perlprimer.sourceforge.net/
Software-PyMood - http://allometra.com/
Software-Seqtools - https://www.seqtools.dk/seqtools.htm
Software-Staden Package - http://staden.sourceforge.net/
Software-Vmatch - http://www.vmatch.de/
Tools-BioToolkit - http://www.changbioscience.com/biotoolkit.html
Tools-BLAST (NCBI) - https://blast.ncbi.nlm.nih.gov/Blast.cgi
Tools-COG - https://www.ncbi.nlm.nih.gov/COG/
Tools-Diana - http://diana.imis.athena-innovation.gr/DianaTools/index.php
Tools-DNA Translation - https://web.expasy.org/translate/
Tools-ENDEAVOUR - https://endeavour.esat.kuleuven.be/
Tools-Ensembl - http://useast.ensembl.org/index.html
Tools-Fasta3 (EMBL) - https://www.ebi.ac.uk/Tools/sss/fasta/
Tools-Gene (Entrez) - https://www.ncbi.nlm.nih.gov/gene?db=gene
Tools-GoMiner - https://discover.nci.nih.gov/gominer/index.jsp
Tools-MirTif - http://mirtif.bii.a-star.edu.sg/
Tools-NEBcutter - http://nc2.neb.com/NEBcutter2/
Tools-RegRNA - http://regrna2.mbc.nctu.edu.tw/
Tools-Research Sites - http://www.yk.rim.or.jp/~aisoai/molbio.html
Tools-Restriction Mapper - http://www.restrictionmapper.org/
Tools-Ribosomal Project II - http://rdp.cme.msu.edu/
Tools-SeWeR - http://www.bioinformatics.org/sewer/
Tools-SGC - https://www.thesgc.org/
Tools-snoGPS - http://lowelab.ucsc.edu/snoGPS/
Tools-Time Tree - http://www.timetree.org/
Tools-Tree of Life - http://tolweb.org/tree/phylogeny.html
Tools-tRNAscan - http://lowelab.ucsc.edu/tRNAscan-SE/
Tools-VecScreen - https://www.ncbi.nlm.nih.gov/tools/vecscreen/
Tools-WatCut - http://watcut.uwaterloo.ca/template.php
Tools-Webcutter - http://www.firstmarket.com/cutter/cut2.html
Tools-WebLogo Sequences - http://weblogo.berkeley.edu/
Tutorial-DNA from the Beginning - http://www.dnaftb.org/
Tutorial-DNA Seen By Coder - https://berthub.eu/amazing-dna/
Tutorial-Learn Genetics - https://learn.genetics.utah.edu/
Tutorial-Multiple Alignments - https://genome.weizmann.ac.il/~pietro/Making_and_using_protein_MA/
Tutorial-Online Analysis Tools - http://molbiol-tools.ca/
Tutorial-Protein Sequence Analysis - http://130.88.97.239/bioactivity/prefacefrm.html
Tutorial-Sequence Analysis (SADR) - https://bibiserv.cebitec.uni-bielefeld.de/sadr/
Understanding Genetics - https://genetics.thetech.org/
Wikipedia-Molecular Biology Portal - https://en.wikipedia.org/wiki/Portal:Molecular_and_cellular_biology

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