User Input and Settings

The following sections detail the input to Snipper, as well as the settings supplied.

SNPs

SNP Chromosome Position
rs13292136 chr9 81952128
rs4607103 chr3 64711904
rs757210 chr17 36096515
rs972283 chr7 130466854
rs1801282 chr3 12393125
rs12779790 chr10 12328010
rs2237892 chr11 2839751
rs10923931 chr1 120517959
rs7578597 chr2 43732823
rs1470579 chr3 185529080
rs7754840 chr6 20661250
rs5215 chr11 17408630
rs9939609 chr16 53820527
rs2943641 chr2 227093745
rs1111875 chr10 94462882
rs864745 chr7 28180556
rs4457053 chr5 76424949
rs3020789 chrX 152892987
rs10830963 chr11 92708710
rs10811661 chr9 22134094
rs243021 chr2 60584819
rs11634397 chr15 80432222
rs7903146 chr10 114758349
rs8042680 chr15 91521337
rs7961581 chr12 71663102
rs231362 chr11 2691471
rs13266634 chr8 118184783
rs1552224 chr11 72433098
rs896854 chr8 95960511
rs10010131 chr4 6292915
rs7957197 chr12 121460686
rs1531343 chr12 66174894

Regions

No regions given by the user.

Genes

No genes explicitly requested by the user.

Parameters

Parameter Value
List of SNPs rs13292136, rs4607103, rs757210, rs972283, rs1801282, rs12779790, rs2237892, rs10923931, rs7578597, rs1470579, rs7754840, rs5215, rs9939609, rs2943641, rs1111875, rs864745, rs4457053, rs3020789, rs10830963, rs10811661, rs243021, rs11634397, rs7903146, rs8042680, rs7961581, rs231362, rs13266634, rs1552224, rs896854, rs10010131, rs7957197, rs1531343
Distance to search from each SNP 250000
Number of genes to return near each SNP 9999
Search terms diabetes, insulin, glucose
OMIM True
PubMed True
Maximum number of recent PubMed articles to return 10
Search for each (search term)*(gene) combination False
GeneRIF True
ScanDB True
ScanDB P-value threshold 1e-05
MiMI True
Build for SNP and gene positions hg19

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