Systems Biology Group at the University of Michigan.
Pooling Designs for Systems Biology
Advisor : Peter Woolf
Papers
A Global Gene Regulatory Network for Root Epidermis Cell Differentiation in Arabidopsis.
In Preparation, 2009
with Angela Bruex, Abhik Shah, Peter Woolf & John Schiefelbein
QUAPO : Quantiative Analysis for Pooling in High-Througput Screening.
In Preparation, 2009
with Anna Gilbert & Peter Woolf
poolMC : Smart pooling of mRNA samples in microarray experiments.
In Preparation, 2009
with Angela Bruex, Anna Gilbert, Peter Woolf & John Schiefelbein
A
computational approach to inferring cellular protein binding affinities from quantitative FRET
imaging equation
Proteomics, 2009
with Khamir Mehta, Adam Hoppe, Peter Woolf & Jennifer Linderman
Pooling in
High-Throughput Drug Screening - Review (please email me if you can't access the paper)
Current Opinion in Drug Discovery & Development, 2009
with Peter Woolf
poolHiTS : A Shifted Transversal Design pooling strategy for High-Througput Drug Screening. (Open Access) - BMC Bioinformatics, 2008.
with Peter Woolf
Electrocatalytic properties of perovskite-type
La1-xSrxCoO3 (x
in [0,0.4]) obtained by a novel stearic acid sol-gel method for electrocatalysis of O2
evolution in KOH solutions.
International Journal of Hydrogen Energy, 2005.
with Basant Lal, Mandeep Gupta & R.N. Singh
Talks/Projects
QUAPO: Quantitative Analysis of Pooling in High-Throughput Drug Screening. (Slides)
DIMACS/DyDAn Workshop on Streaming, Coding, and Compressive Sensing: Unifying Theory and Common
Applications to Sparse Signal/Data Analysis and Processing - Rutgers University, March, 2009.
poolMC : Smart pooling of mRNA samples in microarray experiments. (Preprint) (Slides)
STATS 545 : Data Analysis in Molecular Biology - Course Project, Winter 2008.
Phosphoprotein Waves in Bistable MAPK cascades. (Paper) (Slides)
MATH 563 : Advanced Mathematical Biology - Course Project, Winter 2007.
Multiplexed Experiment Design for High-Throughput Screening : A Machine Learning Approach. (Preprint) (BEST Code)
with Peter Woolf
Error Analysis of Cluster Size Distribution Estimation Methods. (Paper)
ChE 696 : Networks, Fractals, Percolation - Course Project, Winter 2006.