Abadia Patino, L., P. Courvalin, and B. Perichon. 2002. Vane gene cluster of vancomycin-resistant enterococcus faecalis bm4405. Journal of Bacteriology 184:6457-6464.

Abrams, P. A. 1993. Does increased mortality favor the evolution of more rapid senescence? Evolution 47:877-887.

Abrams, R. H. 1957. Double pregnancy. Report of a case with thirty-five days between deliveries. Obstetrics and Gynecology 9:435-438.

Achtman, M., T. Azuma, D. E. Berg, Y. Ito, G. Morelli, Z.-J. Pan, S. Suerbaum et al. 1999. Recombination and clonal groupings within helicobacter pylori from different geographical regions. Molecular Microbiology 32:459-470.

Achtman, M., G. Morelli, P. Zhu, T. Wirth, I. Diehl, B. Kusecek, A. J. Vogler et al. 2004. Microevolution and history of the plague bacillus, yersinia pestis. Proceedings of the National Academy of Sciences USA 101:17837-17842.

Achtman, M., K. Zurth, G. Morelli, G. Torrea, A. Guiyoule, and E. Carniel. 1999. Yersinia pestis, the cause of plague, is a recently emerged clone of yersinia pseudotuberculosis. Proceedings of the National Academy of Sciences USA 96:14043-14048.

Ackermann, M., L. Chao, C. T. Bergstrom, and M. Doebeli. 2007. On the evolutionary origin of aging. Aging Cell 6:235-244.

Ackermann, M., S. C. Stearns, and U. Jenal. 2003. Senescence in a bacterium with asymmetric division. Science 300:1920-1920.

Adair, L. S. 2001. Size at birth predicts age at menarche. Pediatrics 107:E59.

Adams, B., E. C. Holmes, C. Zhang, M. P. Mammen, S. Nimmannitya Jr., S. Kalayanarooj, and M. Boots. 2006. Cross-protective immunity can account for the alternating epidemic pattern of dengue virus serotypes circulating in bangkok. Proceedings of the National Academy of Sciences USA 103:14234-14239.

Aeschlimann, P. B., M. A. Haberli, T. B. H. Reusch, T. Boehm, and M. Milinski. 2003. Female sticklebacks gasterosteus aculeatus use self-reference to optimize mhc allele number during mate selection. Behavioral Ecology and Sociobiology 54:119-126.

Agostini, H. T., R. Yanagihara, V. Davis, C. F. Ryschkewitsch, and G. L. Stoner. 1997. Asian genotypes of jc virus in native americans and in a pacific island population: Markers of viral evolution and human migration. Proceedings of the National Academy of Sciences USA 94:14542-14546.

Aguirre, A. A., C. Brojer, and T. Morner. 1999. Descriptive epidemiology of roe deer mortality in sweden. Journal of Wildlife Diseases 35:753-762.

Aidoo, M., D. J. Terlouw, M. Kolczak, P. McElroy, F. ter Kuile, S. Kariuki, B. Nahlen et al. 2002. Protective effects of the sickle cell gene against malaria morbidity and mortality. The Lancet 369:1311-1312.

Akey, J. M., M. A. Eberle, M. J. Rieder, C. S. Carlson, M. D. Shriver, D. A. Nickerson, and L. Kruglyak. 2004. Population history and natural selection shape patterns of genetic variation in 132 genes. PLoS Biology 2:e286.

Akey, J. M., G. Zhyang, K. Zhang, L. Jin, and M. D. Shriver. 2002. Interrogating a high-density snp map for signatures of natural selection. Genome Research 12:1805-1814.

Akopyanz, N., N. O. Bukanov, T. U. Westblom, and D. E. Berg. 1992. Pcr-based rflp analysis of DNA sequence diversity in the gastric pathogen helicobacter pylori. Nucleic Acids Research. 20:6221-6225.

Albert, T. J., D. Dailidiene, G. Dailide, J. E. Norton, A. Kalia, T. A. Richmond, M. Molla et al. 2005. Mutation discovery in bacterial genomes: Metronidazole resistance in helicobacter pylori. Nature Methods 2:951.

Alberti, K. G. M. M., P. Zimmer, and J. Shaw. 2006. Metabolic syndrome – a new world-wide definition. A consensus statement from the international diabetes federation. Diabetic Medicine 23:469-480.

Alberts, S. C., and C. Ober. 1993. Genetic variability in the major histocompatibility complex: A review of non-pathogen-mediated selective mechanisms. Yearbook of Physical Anthropology 36:71-89.

Aldrich, C. L., C. Wambebe, L. Odama, A. Di Rienzo, and C. Ober. 2002. Linkage disequilibrium and age estimates of a deletion polymorphism (1597deltac) in hla-g suggest non-neutral evolution. Human Immunology 63:405-412.

Alexander, R. D. 1979, Darwinism and human affairs. Seattle, University of Washington Press.

—. 1989. Evolution of the human psyche, Pages 455-513 in P. Mellars, and C. Stringer, eds. The human revolution. Edinburgh, University of Edinburgh Press.

—. 1990. Epigenetic rules and darwinian algorithms: The adaptive study of learning and development. Ethology and Sociobiology 11:1-63.

Alizon, S., and M. van Baalen. 2005. Emergence of virulence trade-offs. The American Naturalist 165:E155-E167.

Allison, A. C. 1954. The distribution of the sickle-cell trait in east africa and elsewhere, and its apparent relationship to the incidence of subtertian malaria. Transactions of the Royal Society of Tropical Medicine and Hygiene 48:312-318.

—. 1954. Protection afforded by sickle-cell trait against subtertian malareal infection British Medical Journal 1:290-294.

—. 1964. Polymorphism and natural selection in human populations. Cold Spring Harbor Symposiums on Quantitative Biology 29:137-149.

Allison, A. C., E. W. Ikin, A. E. Mourant, and A. B. Raper. 1952. Blood groups and other genetic traits in east african tribes. Journal of The Royal Anthropological Institute of Great Britain and Ireland 82:55-60.

Alm, R. A., L. S. Ling, D. T. Moir, B. L. King, E. D. Brown, P. C. Doig, D. R. Smith et al. 1999. Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen helicobacter pylori. Nature 397:176-180.

Alonso, P. L., J. Sacarlal, J. J. Aponte, A. Leach, E. Macete, P. Aide, B. Sigauque et al. 2005. Duration of protection with rts,s/as02a malaria vaccine in prevention of plasmodium falciparum disease in mozambican children: Single-blind extended follow-up of a randomised controlled trial. Lancet 366:2012-2018.

Altemus, M., P. A. Deuster, E. Gallivan, C. S. Carter, and P. W. Gold. 1995. Suppression of hypothalamic-piituitary-adrenal axis responses to stress in lactating women. Journal of Clinical Endocrinology and Metabolism 80:2954-2959.

Altshuler, D., J. N. Hirschhorn, M. Klannemark, C. M. Lindgren, M.-C. Vohl, J. Nemesh, C. R. Lane et al. 2000. The common ppargamma pro12ala polymorphism is associated with decreased risk of type 2 diabetes. Nature Genetics 26:76-80.

American Psychiatric Association. 1987, Diagnostic and statistical manual of the mental disorders, dsmiiir. Washington DC, American Psychiatric Press.

Ammann, R. W., and J. Eckert. 1996. Cestodes: Echinococcus. Gastroenterology Clinics of North America 25:655–689.

Amundadottir, L. T., P. Sulem, J. Gudmundsson, A. Helgason, A. Baker, B. A. Agnarsson, A. Sigurdsson et al. 2006. A common variant associated with prostate cancer in european and african populations. Nature Genetics 38:652-658.

Anderson, A. B. M., K. M. Laurence, and A. C. Turnbull. 1969. The relationship in anencephaly between the size of the adrenal cortex and the length of gestation. Journal of Obstetrics and Gynaecology of the British Commonwealth 76:196-199.

Anderson, D. J. 1990. On the evolution of human brood size. Evolution 44:438-440.

Anderson, K. G., H. Kaplan, and J. Lancaster. 1999. Paternal care by fathers and stepfathers i: Reports from albuquerque men. Evolution and Human Behavior 20:405-431.

Anderson, R. A., B. J. G. Knols, and J. C. Koella. 2000. Plasmodium falciparum sporozoites increase feeding-associated mortality of their mosquito hosts anopheles gambiae s.L. Parasitology 120:329-333.

Anderson, R. A., J. C. Koella, and H. Hurd. 1999. The effect of plasmodium yoelii nigeriensis infection on the feeding persistence of anopheles stephensi liston throughout the sporogonic cycle. Proceedings of the Royal Society B 266:1729-1733.

Anderson, R. M., and R. M. May. 1982. Coevolution of hosts and parasites. Parasitology 85:411-426.

—. 1991, Infectious diseases of humans: Dynamics and control. Oxford, Oxford University Press.

Andersson, D. I., and D. Hughes. 1996. Muller's ratchet decreases fitness of a DNA-based microbe. Proceedings of the National Academy of Sciences USA 93:906-907.

Ando, T., Q. Xu, M. Torres, K. Kusugami, D. A. Israel, and M. J. Blaser. 2000. Restriction-modification system differences in helicobacter pylori are a barrier to interstrain plasmid transfer. Molecular Microbiology 37:1052-1065.

André, J.-B., and S. Gandon. 2006. Vaccination, within-host dynamics, and virulence evolution. Evolution 60:13-23.

André, J.-B., and B. Godelle. 2005. Multicellular organization in bacteria as a target for drug therapy. Ecology Letters 8:800-810.

André, J.-B., and M. E. Hochberg. 2005. Virulence evolution in emerging infectious diseases. Evolution 59:1406-1407.

Anon. 2004. Monster in the making. New Scientist Issue 2465 (18 September):3.

Antia, R., and J. C. Koella. 1994. A model of non-specific immunity. Journal of Theoretical Biology 168:141-150.

Antia, R., B. R. Levin, and R. M. May. 1994. Within-host population dynamics and the evolution and maintenance of microparasite virulence. The American Naturalist 144:457-472.

Antia, R., R. R. Regoes, J. C. Koella, and C. T. Bergstrom. 2003. The role of evolution in the emergence of infectious diseases. Nature 426:658-661.

Antignac, A., P. Kriz, G. Tzanakaki, J. M. Alonso, and M. K. Taha. 2001. Polymorphism of neisseria meningitidis pena gene associated with reduced susceptibility to penicillin. Journal of Antimicrobial Chemotherapy 47:285-296.

Antón, S. C., W. R. Leonard, and M. L. Robertson. 2002. An ecomorphological model of the initial hominid dispersal from africa. Journal of Human Evolution 43:773-785.

Antonsson, A., and B. G. Hansson. 2002. Healthy skin of many animal species harbors papillomaviruses which are closely related to their human counterparts. Journal of Virology 76:12537-12542.

Antunes, P., J. Machado, and L. Peixe. 2006. Illegal use of nitrofurans in food animals: Contribution to human salmonellosis? Clinical Microbiology and Infection 12:1047-1049.

Apanius, V., D. Penn, P. R. Slev, L. R. Ruff, and W. K. Potts. 1997. The nature of selection on the major histocompatibility complex. Critical Reviews in Immunology 17:179-224.

Apetrei, C., A. Kaur, N. W. Lerche, M. Metzger, I. Pandrea, J. Hardcastle, S. Falkenstein et al. 2005. Molecular epidemiology of simian immunodeficiency virus sivsm in u.S. Primate centers unravels the origin of sivmac and sivstm. Journal of Virology 79:8991-9005.

Apte, S. V., and L. Iyengar. 1972. Composition of the human foetus. British Journal of Nutrition 27:305-312.

Apter, D., L. Viinikka, and R. Vihko. 1978. Hormonal pattern of adolescent menstrual cycles. Journal of Clinical Endocrinology and Metabolism 47:944-954.

Arbuckle, T. E., R. Wilkins, and G. J. Sherman. 1992. Birth weight percentiles by gestational age in canada. Obstetrics and Gynecology 81:39-48.

Arciero, P. J., M. I. Goran, and E. T. Poehlman. 1993. Resting metabolic rate is lower in women than in men. Journal of Applied Physiology 75:2514-2520.

Ardlie, K. G., L. Kruglyak, and M. Seielstad. 2002. Patterns of linkage disequilibrium in the human genome. Nature Reviews Genetics 3:299-309.

Arias, C. A., P. Courvalin, and P. E. Reynolds. 2000. Vanc cluster of vancomycin-resistant enterococcus gallinarum bm4174. Antimicrobial Agents and Chemotherapy 44:1660-1666.

Arking, D. E., A. Krebsova, M. Macek, Sr., M. Macek, Jr., A. Arking, I. S. Mian, L. Fried et al. 2002. Association of human aging with a functional variant of klotho. Proceedings of the National Academy of Sciences USA 99 856-861.

Armalegos, G. C., K. C. Barnes, and J. Lin. 1996. Disease in human evolution: The re-emergence of infectious disease in the third epidemiological transition. National Museum of Natural History Bulletin for Teachers 18:1-6.

Armalegos, G. C., and J. R. Dewey. 1970. Evolutionary response to human infectious diseases. Bioscience 20:271-275.

Armstrong, G. L., L. A. Conn, and R. W. Pinner. 1999. Trends in infectious disease mortality in the united states during the 20th century. Journal of the American Medical Association 281:61-66.

Arthur, M., F. Depardieu, P. Reynolds, and P. Courvalin. 1996. Quantitative analysis of the metabolism of soluble cytoplasmic peptidoglycan precursors of glycopeptide-resistant enterococci. Molecular Microbiology 21:33-44.

Arthur, M., P. Reynolds, and P. Courvalin. 1996. Glycopeptide resistance in enterococci. Trends in Microbiology 4:401-407.

Ashley-Koch, A., Q. Yang, and R. S. Olney. 2000. Sickle hemoglobin (hbs) allele and sickle cell disease: A huge review. American Journal of Epidemiology 151:839-845.

Aspholm-Hurtig, M., G. Dailide, M. Lahmann, A. Kalia, D. Ilver, N. Roche, S. Vikstrom et al. 2004. Functional adaptation of baba, the h. Pylori abo blood group antigen binding adhesin. Science 305:519-522.

Atherton, J. C. 2006. The pathogenesis of helicobacter pylori induced gastro-duodenal diseases. Annual Review of Pathology: Mechanisms of Disease 1:63-96.

Ausman, L. M., E. M. Powell, D. L. Mercado, K. W. Samonds, M. el Lozy, and D. L. Gallina. 1982. Growth and developmental body composition of the cebus monkey (cebus albifrons). American Journal of Primatology 3:211-227.

Austad, S. N. 1993. Retarded senescence in an insular population of virginia opossums (didelphis virginiana). Journal of Zoology 229:695-708.

Austad, S. N., and K. E. Fischer. 1991. Mammalian aging, metabolism, and ecology - evidence from the bats and marsupials. Journals of Gerontology 46:B47-B53.

—. 1992. Primate longevity: Its place in the mammalian scheme. American Journal of Primatology 28:251-261.

Bach, J. F. 2002. Mechanisms of disease: The effect of infections on susceptibility to autoimmune and allergic diseases. The New England Journal of Medicine 347:911-920.

Bager, F., F. M. Aarestrup, M. Madsen, and H. C. Wegener. 1999. Glycopeptide resistance in enterococcus faecium from broilers and pigs following discontinued use of avoparcin. Microbial Drug Resistance 5:53-56.

Bager, F., M. Madsen, J. Christensen, and F. M. Aarestrup. 1997. Avoparcin used as a growth promoter is associated with the occurrence of vancomycin-resistant enterococcus faecium on danish poultry and pig farms. Preventive Veterinary Medicine 31:95-112.

Balkwill, F., K. A. Charles, and A. Mantovani. 2005. Smoldering and polarized inflammation in the initiation and promotion of malignant disease. Cancer Cell 7:211-217.

Balmer, O. 2006. Ecology and evolution of sleeping sickness. PhD thesis, Yale University.

Bamford, K. B., J. Bickley, J. S. Collins, B. T. Johnston, S. Potts, V. Boston, R. J. Owen et al. 1993. Helicobacter pylori: Comparison of DNA fingerprints provides evidence for intrafamilial infection. Gut 34:1348-1350.

Bamshad, M. 2005. Genetic influences on health: Does race matter? . Journal of the American Medical Association 294:937-946.

Bamshad, M., and S. P. Wooding. 2003. Signatures of natural selection in the human genome. Nature Reviews Genetics 4:99-111.

Bamshad, M. J., S. Mummidi, E. Gonzalez, S. S. Ahuja, D. M. Dunn, W. W. S., S. Wooding et al. 2002. A strong signature of balancing selection in the 5' cis-regulatory region of ccr5. Proceedings of the National Academy of Sciences USA 99:10539-10544.

Bang, H. O., and J. Dyerberg. 1980. Lipid metabolism and ischemic heart disease in greenland eskimo. Advances in Nutrition Research 3:1-22.

Bao, S., Q. Wu, R. E. McLendon, Y. Hao, Q. Shi, A. B. Hjelmeland, M. W. Dewhirst et al. 2006. Glioma stem cells promote radioresistance by preferential activation of the DNA damage response. Nature 444:756-760.

Barber, M., A. A. Dutton, M. A. Beard, P. C. Elmes, and R. Williams. 1960. Reversal of antibiotic resistance in hospital staphylococcal infection. British Medical Journal 1:11-17.

Barber, M., and J. E. M. Whitehead. 1949. Bacteriophage types in penicillin-resistant staphylococcal infections. British Medical Journal 2:565-569.

Barker, D. 1994, Mothers, babies, and disease in later life. London, BMJ Publishing.

—. 1999. The fetal origins of coronary heart disease and stroke: Evolutionary implications, Pages 246-250 in S. Stearns, ed. Evolution in health and disease. Oxford, Oxford University Press.

Barker, D. J., J. G. Eriksson, T. Forsen, and C. Osmond. 2002. Fetal origins of adult disease: Strength of effects and biological basis. International Journal of Epidemiology 31:1235-1239.

Barker, D. J., C. Osmond, J. Golding, D. Kuh, and M. E. Wadsworth. 1989. Growth in utero, blood pressure in childhood and adult life, and mortality from cardiovascular disease. British Medical Journal 298:564-567.

Barlow, M., and B. G. Hall. 2002. Origin and evolution of the ampc beta-lactamases of citrobacter freundii. Antimicrobial Agents and Chemotherapy 46:1190.

—. 2002. Phylogenetic analysis shows that the oxa beta-lactamase genes have been on plasmids for millions of years. Journal of Molecular Evolution 55:314-321.

—. 2002. Predicting evolutionary potential: In vitro evolution accurately reproduces natural evolution of the tem beta-lactamase. Genetics 160:823-832.

—. 2003. Experimental prediction of the natural evolution of antibiotic resistance. Genetics 163:1237-1241.

Barr, I. G., N. Komadina, A. Hurt, R. Shaw, C. Durrant, P. Iannello, C. Tomasov et al. 2003. Reassortants in recent human influenza a and b isolates from south east asia and oceania. Virus Research 98:35-44.

Barret, L., R. Dunbar, and J. Lycett. 2002, Human evolutionary psychology. London, Palgrave.

Barrett, J. A. 1981. The evolutionary consequences of monocultures, Pages 209-249 in J. A. Bishop, and L. M. Cook, eds. Genetic consequences of man-made change. London, Academic Press.

Barrett-Muir, W., R. Nichls, and J. Breuer. 2002. Phylogenetic analysis of varicella-zoster virus: Evidence of intercontinental spread of genotypes and recombination. Journal of Virology 76:1971-1979.

Bartke, A. 2005. Minireview: Role of the growth hormone/insulin-like growth factor system in mammalian aging. Endocrinology 146:3718-3723.

Bartke, A., V. Chandrashekar, F. Dominici, D. Turyn, B. Kinney, R. Steger, and J. J. Kopchik. 2003. Insulin-like growth factor 1 (igf-1) and aging: Controversies and new insights. Biogerontology 4:1-8.

Bartkova, J., Z. Horejsi, K. Koed, A. Krämer, F. Tort, K. Zieger, P. Guldberg et al. 2005. DNA damage response as a candidate anti-cancer barrier in early human tumorigenesis. Nature 434:864-870.

Bartlett, M. S. 1957. Measles periodicity and community size. Journal of the Royal Statistical Society A 120:48-70.

Bartoshuk, L. M., and G. K. Beauchamp. 1994. Chemical senses. Annual Review of Psychology 45:419-445.

Bateman, A. J. 1948. Intra-sexual selection in drosophila. Heredity 2:349-368.

Bateson, P., D. Barker, T. Clutton-Brock, D. Deb, B. D'Udine, R. A. Foley, P. Gluckman et al. 2004. Developmental plasticity and human health. Nature 430:419-421.

Beachy, P. A., S. S. Karhadkar, and D. M. Berman. 2004. Tissue repair and stem cell renewal in carcinogenesis. Nature 432:324-331.

Beall, B., R. Facklam, and T. Thompson. 1996. Sequencing emm-specific pcr products for routine and accurate typing of group a streptococci. Journal of Clinical Microbiology. 34:953-958.

Beausejour, C. M., and J. Campisi. 2006. Ageing: Balancing regeneration and cancer. Nature 443:404-405.

—. 2006. Balancing regeneration and cancer. Nature 443:404-405.

Becker, F. F. 1975. Cancer. New York, Plenum Press.

Bedhomme, S., P. Agnew, C. Sidobre, and Y. Michalakis. 2004. Virulence reaction norms across a food gradient. Proceedings of the Royal Society B 271:739-744.

Bedhomme, S., P. Agnew, Y. Vital, C. Sidobre, and Y. Michalakis. 2005. Prevalence-dependent costs of parasite virulence. PLoS Biology 3:e262.

Beeton, M., G. U. Yule, and K. Pearson. 1900. Data for the problem of evolution in man. V. On the correlation between duration of life and the number of offspring. Proceedings of the Royal Society B 67:159-179.

Begovich, A. B., V. E. H. Carlton, L. A. Honigberg, S. J. Schrodi, A. P. Chokkalingam, H. C. Alexander, K. G. Ardlie et al. 2004. A missense single-nucleotide polymorphism is a gene encoding a protein tyrosine phosphatase (ptpn22) is associated with rheumatoid arthritis. American Journal of Human Genetics 75:330-337.

Bell, A. S., J. C. De Roode, D. Sim, and A. F. Read. 2006. Within-host competition in genetically diverse malaria infections: Parasite virulence and competitive success. Evolution 60:1358-1371.

Bentley, G. R. 1994. Ranging hormones: Do hormonal contraceptives ignore human biological variation and evolution? Annals of the New York Academy of Sciences 709:201-203.

Bentley, S. D., D. M. Aanensen, A. Mavroidi, D. Saunders, E. Rabbinowitsch, M. Collins, K. Donohoe et al. 2006. Genetic analysis of the capsular biosynthetic locus from all 90 pneumococcal serotypes. PLoS Genetics 2:e31.

Benyshek, D. C., C. S. Johnston, and J. F. Martin. 2006. Glucose metabolism is altered in the adequately-nourished grand-offspring (f(3) generation) of rats malnourished during gestation and perinatal life. Diabetologia 49:1117-1119.

Berdoy, M., J. P. Webster, and D. W. Macdonald. 2000. Fatal attraction in rats infected with toxoplasma gondii. Proceedings of the Royal Society B 267:1591-1594.

Bereczkei, T., A. Hofer, and Z. Ivan. 2000. Low birth weight, maternal birth-spacing decisions and future reproduction. Human Nature 11:183-205.

Beres, S. B., E. W. Richter, M. J. Nagiec, P. Sumby, S. F. Porcella, F. R. DeLeo, and J. M. Musser. 2006. Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group a streptococcus. Proceedings of the National Academy of Sciences USA 103:7059-7064.

Bergendahl, M., J. A. Aloi, A. Iranmanesh, T. M. Mulligan, and J. D. Veldhuis. 1998. Fasting suppresses pulsatile luteinizing hormone (lh) secretion and enhances orderliness of lh release in young but not older men. Journal of Clinical Endocrinology and Metabolism 83:1967-1975.

Bergstrom, C. T., M. Lo, and M. Lipsitch. 2004. Ecological theory suggests that antimicrobial cycling will not reduce antimicrobial resistance in hospitals. Proceedings of the National Academy of Sciences USA 101:13285-13290.

Berkhoff, E. G. M., E. de Wit, M. M. Geelhoed-Mieras, A. C. M. Boon, J. Symons, R. A. M. Fouchier, A. Osterhaus et al. 2006. Fitness costs limit escape from cytotoxic t lymphocytes by influenza a viruses. Vaccine 24:6594-6596.

Bernard, H. U., I. E. Calleja-Macias, and S. T. Dunn. 2006. Genome variation of human papillomavirus types: Phylogenetic and medical implications. International Journal of Cancer 117:1071-1076.

Bernatchez, L., and C. Landry. 2003. Mhc studies in nonmodel vertebrates: What have we learned about natural selection in 15 years? Journal of Evolutionary Biology 16:363-377.

Bersaglieri, T., P. C. Sabeti, N. Patterson, T. Vanderploeg, S. F. Schaffner, J. A. Drake, M. Rhodes et al. 2004. Genetic signatures of strong recent positive selection at the lactase gene. American Journal of Human Genetics 74:1111-1120.

Bertram, C., A. R. Trowern, N. Copin, A. A. Jackson, and C. B. Whorwood. 2001. The maternal diet during pregnancy programs altered expression of the glucocorticoid receptor and type 2 11beta-hydroxysteroid dehydrogenase: Potential molecular mechanisms underlying the programming of hypertension in utero. Endocrinology 142:2841-2853.

Bessen, D. E., and A. Kalia. 2002. Genomic localization of a t serotype locus to a recombinatorial zone encoding extracellular matrix-binding proteins in streptococcus pyogenes. Infection and Immunity 70:1159-1167.

Bessen, D. E., A. Manoharan, F. Luo, J. E. Wertz, and D. A. Robinson. 2005. Evolution of transcription regulatory genes is linked to niche specialization in the bacterial pathogen streptococcus pyogenes. Journal of Bacteriology 187:4163-4172.

Besson, A., S. Salemi, S. Gallati, A. Jenal, R. Horn, P. S. Mullis, and P. E. Mullis. 2003. Reduced longevity in untreated patients with isolated growth hormone deficiency. Journal of Clinical Endocrinology and Metabolism 88:3664-3667.

Betzig, L. 1986, Despotism and differential reproduction. New York, Aldine de Gruyter.

Beydoun, H., and A. F. Saftlas. 2005. Association of human leucocyte antigen sharing with recurrent spontaneous abortions Tissue Antigens 65:123-135.

Bhasin, S., R. A. Parker, F. Sattler, R. Haubrich, B. Alston, T. Umbleja, and C. M. Shikuma. 2006. Effects of testosterone supplementation on whole body and regional fat mass and distribution in hiv-infected men with abdominal obesity. Journal of Clinical Endocrinology and Metabolism 92:1049-1057.

Bhasin, S., L. Woodhouse, R. Casaburi, A. B. Singh, R. P. Mac, M. Lee, K. E. Yarasheski et al. 2005. Older men are as responsive as young men to the anabolic effects of graded doses of testosterone on the skeletal muscle. Journal of Clinical Endocrinology and Metabolism 90:678-688.

Bibollet-Ruche, F., E. Bailes, F. Gao, X. Pourrut, K. L. Barlow, J. P. Clewley, J. M. Mwenda et al. 2004. New simian immunodeficiency virus infecting de brazza's monkeys (cercopithecus neglectus): Evidence for a cercopithecus monkey virus clade. Journal of Virology 78:7748-7762.

Bielefeldt-Ohmann, H. 1997. Pathogenesis of dengue virus diseases: Missing pieces in the jigsaw. Trends in Microbiology 5:409-413.

Birkhead, T. R. 1978. Behavioral adaptations to high density nesting in the common guillemot, uria aalge. Animal Behavior 26:321-331.

Bisno, A. L. 1990. The resurgence of acute rheumatic fever in the united states. Annual Review of Medicine 41:319-329.

Bisno, A. L., and D. L. Stevens. 2005. Streptococcus pyogenes, Pages 2362 -2379 in G. L. Mandell, J. E. Bennett, and R. Dolin, eds. Mandell, douglas, and bennett's principles and practice of infectious diseases. Philadelphia, Elsevier Churchill Livingstone.

Biswas, S., and J. M. Akey. 2006. Genomic insights into positive selection. Trends in Genetics 22:437-446.

Bjorkholm, B., M. Sjolund, P. G. Falk, O. G. Berg, L. Engstrand, and D. I. Andersson. 2001. Mutation frequency and biological cost of antibiotic resistance in helicobacter pylori. Proceedings of the National Academy of Sciences USA 98:14607-14612.

Bjorkman, J., D. Hughes, and D. I. Andersson. 1998. Virulence of antibiotic-resistant salmonella typhimurium. Proceedings of the National Academy of Sciences USA 95:3949-3953.

Bjørnstad, O. N., and E. T. Harvill. 2004. Evolution and emergence of bordetella in humans. Trends in Microbiology 13:355 - 359.

Black, A. E., W. A. Coward, T. J. Cole, and A. M. Prentice. 1996. Human energy expenditure in affluent societies: An analysis of 574 doubly-labelled water measurements. European Journal of Clinical Nutrition 50:72-92.

Blakeslee, A. F. 1932. Genetics of sensory thresholds: Taste for phenyl-thio-carbamide. Proceedings of the National Academy of Sciences USA.

Blakey, J., E. Halapi, U. S. Bjornsdottir, A. Wheatley, S. Kristinsson, R. Upmanyu, K. Stefansson et al. 2005. Contribution of adam33 polymorphisms to the population risk of asthma. Thorax 60:274-276.

Blalock, J. E. 1994. The syntax of immune-neuroendocrine communication. Immunology Today 15:504-511.

Blanco, M. A., and P. W. Sherman. 2005. Maximum longevities of chemically protected and non-protected fishes, reptiles, and amphibians support evolutionary hypotheses of aging. Mechanisms of Ageing and Development 126:794-803.

Blancou, J., and M. F. A. Aubert. 1997. Transmission du virus de la rage: Importance del la barrière d’espèce. Bulletin de l'Académie Nationale de la Médicine 181:301-312.

Blaser, M. J., and J. C. Atherton. 2004. Helicobacter pylori persistence: Biology and disease. Journal of Clinical Investigation 113:321-333.

Blattner, F. R., G. Plunkett, 3rd, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides et al. 1997. The complete genome sequence of escherichia coli k-12. Science 277:1453-1474.

Boehm, T., and F. Zufall. 2006. Mhc peptides and the sensory evaluation of genotype. Trends in Neurosciences 29:100-107.

Boerlin, P., R. Travis, C. L. Gyles, R. Reid-Smith, N. Janecko, H. Lim, V. Nicholson et al. 2005. Antimicrobial resistance and virulence genes of escherichia coli isolates from swine in ontario. Applied Environmental Microbiology 71:6753-6761.

Bogaert, A. F., and W. A. Fisher. 1995. Predictors of university men's number of sexual partners. Journal of Sex Research 32:119-130.

Bogin, B. 1999. Evolutionary perspective on human growth Annual Review of Anthropology 28:109-153.

Boiko, J., D. Jaquet, D. Chevenne, O. Rigal, P. Czernichow, and C. Levy-Marchal. 2005. In situ lipolytic regulation in subjects born small for gestational age. International Journal of Obesity (London) 29:565-570.

Bonhoeffer, S., C. Chappey, N. T. Parkin, J. M. Whitcomb, and C. J. Petropoulos. 2004. Evidence for positive epistasis in hiv-1. Science 306:1547-1550.

Bonhoeffer, S., R. E. Lenski, and D. Ebert. 1996. The curse of the pharaoh: The evolution of virulence in pathogens with long living propagules. Proceedings of the Royal Society B 263:715-721.

Bonhoeffer, S., R. M. May, G. M. Shaw, and M. A. Nowak. 1997. Virus dynamics and drug therapy. Proceedings of the National Academy of Sciences USA 94:6971-6976.

Bonhoeffer, S., and M. A. Nowak. 1994. Intra-host and inter-host selection: Viral evolution of immune function impairment. Proceedings of the National Academy of Sciences USA 91:8062-8066.

Bonneaud, C., O. Chastel, P. Federici, H. Westerdahl, and G. Sorci. 2006. Complex mhc-based mate choice in a wild passerine. Proceedings of the Royal Society B 273:1111-1116.

Bonnelykke, B. 1990. Maternal height and weight and human twinning. Biology and Society 7:23-30.

Bonnet, D., and J. E. Dick. 1997. Human acute myeloid leukemia is organized as a hierarchy that originates from a primitive hematopoietic cell. Nature Medicine 3:730-737.

Bonten, M. J., D. J. Austin, and M. Lipsitch. 2001. Understanding the spread of antibiotic resistant pathogens in hospitals: Mathematical models as tools for control. Clinical Microbiology and Infection 33:1739-1746.

Bonten, M. J., and R. A. Weinstein. 1996. The role of colonization in the pathogenesis of nosocomial infections. Infection Control and Hospital Epidemiology 17:193-200.

Booth, A., G. Shelley, A. Mazur, G. Tharp, and R. Kittok. 1989. Testosterone, and winning and losing in human competition. Hormones and Behavior 23:556-571.

Borgerhoff Mulder, M. 1987. On cultural and reproductive success: Kipsigis evidence. American Anthropologist 89:617-734.

Boulanger, L. M., G. S. Huh, and C. J. Shatz. 2001. Neuronal plasticity and cellular immunity: Shared molecular mechanisms. Current Opinion In Neurobiology 11:568-578.

Boulanger, L. M., and C. J. Shatz. 2004. Immune signalling in neural development, synaptic plasticity and disease. Nature Reviews Neuroscience 5:521-531.

Bowcock, A. M., A. Ruiz-Linares, J. Tomfohrde, E. Minch, J. R. Kidd, and L. L. Cavalli-Sforza. 1994. High resolution of human evolutionary trees with polymorphic microsatellites. Nature 368:455-457.

Bozdogan, B., P. C. Appelbaum, L. M. Kelly, D. B. Hoellman, A. Tambic-Andrasevic, L. Drukalska, W. Hryniewicz et al. 2003. Activity of telithromycin compared with seven other agents against 1039 streptococcus pyogenes pediatric isolates from ten centers in central and eastern europe. Clinical Microbiology and Infection 9:741-745.

Breivik, J. 2001. Don't stop for repairs in a war zone: Darwinian evolution unites genes and environment in cancer development. Proceedings of the National Academy of Sciences USA 98:5379-5381.

Breivik, J., and G. Gaudernack. 1999. Carcinogenesis and natural selection: A new perspective to the genetics and epigenetics of colorectal cancer. Advances in Cancer Research 76:187-212.

—. 1999. Genomic instability, DNA methylation, and natural selection in colorectal carcinogenesis. Seminars in Cancer Biology 9:245-254.

Bremermann, H. J., and J. Pickering. 1983. A game-theoretical model of parasite virulence. Journal of Theoretical Biology 100:411-426.

Bretscher, M. T., C. L. Althaus, V. Muller, and S. Bonhoeffer. 2004. Recombination in hiv and the evolution of drug resistance: For better or for worse? BioEssays 26:180-188.

Bribiescas, R. G. 2001. Reproductive ecology and life history of the human male. Yearbook of Physical Anthropology 33:148-176.

—. 2001. Reproductive physiology of the human male: An evolutionary and life history perspective, Pages 107-133 in P. T. Ellison, ed. Reproductive ecology and human evolution. New York, Aldine de Gruyter.

—. 2001. Serum leptin levels and anthropometric correlates in ache amerindians of eastern paraguay. American Journal of Physical Anthropology 115:297-303.

—. 2005. Age-related differences in serum gonadotropin (fsh and lh), salivary testosterone, and 17-beta estradiol levels among ache amerindian males of paraguay. American Journal of Physical Anthropology 127:114-121.

—. 2006. On the evolution of human male reproductive senescence: Proximate mechanisms and life history strategies. Evolutionary Anthropology 15:132-141.

Bridges, B. A. 1994. Spontaneous mutation: Some conceptual difficulties. Mutation Research 304:13-17.

Briefel, R. R., and C. L. Johnson. 2004. Secular trends in dietary intake in the united states. Annual Review of Nutrition 24:401-431.

Bronson, F. H. 1989, Mammalian reproductive biology. Chicago, University of Chicago Press.

Brosch, R., S. V. Gordon, M. Marmiesse, P. Brodin, C. Bucjrieser, K. Eiglmeier, T. Garnier et al. 2002. A new evolutionary scenario for the mycobacterium tuberculosis complex. Proceedings of the National Academy of Sciences USA 99:3684-3689.

Brosens, J. J., R. Pijnenborg, and I. A. Brosens. 2002. The myometrial junctional zone spiral arteries in normal and abnormal pregnancies. A review of the literature American Journal of Obstetrics and Gynecology 187:1416-1423.

Brown, E. M., and D. Nathwani. 2005. Antibiotic cycling or rotation: A systematic review of the evidence of efficacy. Journal of Antimicrobial Chemotherapy 55:6-9.

Brown, S. P. 2001. Collective action in an rna virus. Journal of Evolutionary Biology 14:821-828.

Brown-Borg, H. M., K. E. Borg, C. J. Meliska, and A. Bartke. 1996. Dwarf mice and the ageing process. Nature 384:33.

Brunet, A., L. B. Sweeney, J. F. Sturgill, K. F. Chua, P. L. Greer, Y. Lin, H. Tran et al. 2004. Stress-dependent regulation of foxo transcription factors by the sirt1 deacetylase. Science 303:2011-2015.

Brussow, H., C. Canchaya, and W. D. Hardt. 2004. Phages and the evolution of bacterial pathogens: From genomic rearrangements to lysogenic conversion. Microbiology and Molecular Biology Reviews 68:560-602.

Buchanan, K. L., M. R. Evans, A. R. Goldsmith, D. M. Bryant, and L. V. Rowe. 2001. Testosterone influences basal metabolic rate in male house sparrows: A new cost of dominance signalling? Proceedings of the Royal Society B 268:1337-1344.

Buena, F., R. S. Swerdloff, B. S. Steiner, P. Lutchmansingh, M. A. Peterson, M. R. Pandian, M. Galmarini et al. 1993. Sexual function does not change when serum testosterone levels are pharmacologically varied within the normal male range. Fertility and Sterility 59:1118-1123.

Bull, J. J. 1994. Perspective - virulence. Evolution 48:1423-1437.

—. 2006. Optimality models of phage life history and parallels in disease evolution. Journal of Theoretical Biology 241:928-938.

Bull, J. J., and I. J. Molineux. 1992. Molecular genetics of adaptation in an experimental model of cooperation. Evolution 46:882-895.

Bull, J. J., I. J. Molineux, and W. R. Rice. 1991. Selection of benevolence in a host-parasite system. Evolution 45:875-882.

Bunn, H. T. 2007. Meat made us human, Pages 191-211 in P. Ungar, ed. Evolution of the human diet: The known, the unknown, and the unknowable. Oxford, Oxford University Press.

Buonagurio, D. A., S. Nakada, J. D. PArvin, M. Krystal, P. Palese, and W. M. Fitch. 1986. Evolution of human influenza a viruses over 50 years: Rapid, uniform rate of change in ns gene. Science 232:980-982.

Burt, A., and R. Trivers. 2006, Genes in conflict: The biology of selfish genetic elements. Cambridge, Mass., Belknap Press of Harvard University Press.

Busch, R. M., W. M. Fitch, C. A. Bender, and N. J. Cox. 1999. Positive selection on the h3 hemagglutinin gene of human influenza virus a. Molecular Biology and Evolution 16:1457-1465.

Bush, K. 2002. The impact of beta-lactamases on the development of novel antimicrobial agents. Current Opinion in Investigational Drugs 3:1284-1290.

Bustamente, C. D., A. Fledel-Alon, S. Williamson, R. Nielsen, M. T. Hubisz, S. Glanowski, D. M. Tanenbaum et al. 2005. Natural selection on protein-coding genes in the human genome. Nature 437:1153-1157.

Byrne, J., and D. Warburton. 1987. Male excess among anatomically normal fetuses in spontaneous abortions. American Journal of Medical Genetics 26:605-611.

Cabana, T., P. Jolicoeur, and J. Michaud. 1993. Prenatal and postnatal growth and allometry of stature, head circumference, and brain weight in québec children American Journal of Human Biology 5:93-99.

Cahill, D. P., K. W. Kinzler, B. Vogelstein, and C. Lengauer. 1999. Genetic instability and darwinian selection in tumours. Trends in Cell Biology 9:M57-60.

Cairns, J. 1975. Mutation selection and the natural history of cancer. Nature 255:197-200.

Calabretta, B., and D. Perrotti. 2004. The biology of cml blast crisis. Blood 103:4010-4022.

Calafell, F., A. Shuster, W. C. Speed, J. R. Kidd, and K. K.K. 1998. Short tandem repeat polymorphism evolution in humans. European Journal of Human Genetics 6:38-49.

Cameron, J. L., and C. Nosbisch. 1991. Suppression of pulsatile luteinizing hormone and testosterone secretion during short term food restriction in the adult male rhesus monkey (macaca mulatta). Endocrinology 128:1532-1540.

Campbell, B. C., L. W.D., and C. K.L. 2001. Reproductive ecology of male immune function and gonadal function, Pages 159-178 in P. T. Ellison, ed. Reproductive ecology and human evolution. New York, Aldine de Gruyter.

Campisi, J. 1997. Aging and cancer: The double-edged sword of replicative senescence. Journal of the American Geriatric Society 45:482-488.

—. 2001. Cellular senescence, aging and cancer. ScientificWorldJournal 1:65.

—. 2002. Cancer and aging: Yin, yang, and p53. Science of Aging Knowledge Environment 2002:pe1.

—. 2003. Cancer and ageing: Rival demons? Nature Reviews Cancer 3:339-349.

—. 2005. Senescent cells, tumor suppression, and organismal aging: Good citizens, bad neighbors. Cell 120:513-522.

Cann, R. L., M. Stoneking, and A. C. Wilson. 1987. Mitochondrial DNA and human evolution. Nature 325:31-36.

Cannon, D. S., T. B. Baker, M. E. Piper, M. B. Scholand, D. L. Lawrence, D. T. Drayna, W. M. McMahon et al. 2005. Associations between phenylthiocarbamide gene polymorphisms and cigarette smoking. Nicotine and Tobacco Research 7:853-858.

Caparon, M. G., and J. R. Scott. 1987. Identification of a gene that regulates expression of m protein, the major virulence determinant of group a streptococci. Proceedings of the National Academy of Sciences USA 84:8677-8681.

Cardon, R. L., and G. R. Abecasis. 2003. Using haplotype blocks to map human complex loci. Trends in Genetics 19:135-140.

Carel, J. C., N. Lahlou, M. Roger, and J. L. Chaussain. 2004. Precocious puberty and statural growth. Human Reproduction Update 10:135-147.

Carius, H. J., T. J. Little, and D. Ebert. 2001. Genetic variation in a host-parasite association: Potential for coevolution and frequency-dependent selection. Evolution 55:1136-1145.

Carlsen, S. M., G. Jacobsen, and P. Romundstad. 2006. Maternal testosterone levels during pregnancy are associated with offspring size at birth. European Journal of Endocrinology 155:365-370.

Carlson, C. S., M. A. Eberle, M. J. Rieder, Q. Yi, L. Kruglvak, and D. A. Nickerson. 2004. Selecting a maximally informative set of single nucleotide polymorphisms for association analysis using linkage disequilibrium. American Journal of Human Genetics 74:106-120.

Carlson, E. A., M. C. Sampson, and L. A. Sroufe. 2003. Implications of attachment theory and research for developmental-behavioral pediatrics. Journal of Developmental & Behavioral Pediatrics 24:364-379.

Carmeliet, P. 2003. Angiogenesis in health and disease. Nature Medicine 9:653-660.

Carosella, E. D., P. Moreau, J. Le Maoult, M. Le Discorde, J. Daussset, and N. Rouas-Freis. 2003. Hla-g molecules: From maternal-fetal tolerance to tissue acceptance. Advances in Immunology 81:199-252.

Carrington, E. R., and R. R. Messick. 1963. Diabetogenic effects of pregnancy. A 10 year survey. American Journal of Obstetrics and Gynecology 85:669-680.

Carson, P. E., C. L. Flanagan, C. E. Ickes, and A. D. Alving. 1956. Enzymatic deficiency in primaquine-sensitive erythrocytes. Science 124:484-485.

Casadewall, B., and P. Courvalin. 1999. Characterization of the vand glycopeptide resistance gene cluster from enterococcus faecium bm4339. Journal of Bacteriology 181:3644-3648.

Catalano, P. M., E. D. Tysbir, S. R. Allen, J. H. McBean, and T. L. McAuliffe. 1992. Evaluation of fetal growth by estimation of neonatal body composition. Obstetrics and Gynecology 79:46-50.

Caterson, I. D., V. Hubbard, G. A. Bray, R. Grunstein, B. C. Hansen, Y. Hong, D. Labarthe et al. 2004. Prevention conference vii: Obesity, a worldwide epidemic related to heart disease and stroke. Group iii: Worldwide comorbidities of obesity. Circulation 110:e476-e483.

Cavalli Sforza, L., and M. W. Feldman. 2003. The application of molecular genetic approaches to the study of human evolution. Nature Genetics 33:266-275.

Cavalli-Sforza, L. L. 2000, Genes, people and language. London, Alan Lane Penguin Press.

Centers for Disease Control. 1994, Addressing emerging infectious disease threats: A prevention strategy for the united states. Atlanta, U.S. Department of Health and Human Services, Public Health Service.

—. 2004. Trends in intake of energy and macronutrients: United states, 1971 – 2000. Morbidity and Mortality Weekly Report 53:80-82.

Cepellini, R., E. S. Curtoni, P. I. Mattiuz, V. Miggiano, G. Scudeller, and A. Serra. 1967. Genetics of leukocyte antigens: A family study of segregation and linkage, Pages 149-185 in E. S. Curtoni, P. L. Mattiuz, and R. M. Tosi, eds. Histocompatibility testing. Copenhagen, Munksgaard.

Cerdeno-Tarraga, A. M., S. Patrick, L. C. Crossman, G. Blakely, V. Abratt, N. Lennard, I. Poxton et al. 2005. Extensive DNA inversions in the b. Fragilis genome control variable gene expression. Science 307:1463-1465.

Cettour-Rose, P., S. Samec, A. P. Russell, S. Summermatter, D. Mainieri, C. Carrillo-Theander, J. P. Montani et al. 2005. Redistribution of glucose from skeletal muscle to adipose tissue during catch-up fat: A link between catch-up growth and later metabolic syndrome. Diabetes 54:751-756.

Chain, P. S., E. Carniel, F. W. Larimer, J. Lamerdin, P. O. Stoutland, W. M. Regala, A. M. Georgescu et al. 2004. Insights into the evolution of yersinia pestis through whole-genome comparison with yersinia pseudotuberculosis. Proceedings of the National Academy of Sciences USA 101:13826-13831.

Chain, P. S., P. Hu, S. A. Malfatti, L. Radnedge, F. Larimer, L. M. Vergez, P. Worsham et al. 2006. Complete genome sequence of yersinia pestis strains antiqua and nepal516: Evidence of gene reduction in an emerging pathogen. Journal of Bacteriology 188:4453-4463.

Chakraborty, R., and K. M. Weiss. 1988. Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci. Proceedings of the Natural Academy of Sciences USA 85:9119-9123.

Chakravarti, A. 1999. Population genetics – making sense out of sequence. Nature Genetics 33:56-60.

Chan, J. L., G. Matarese, G. K. Shetty, P. Raciti, I. Kelesidis, D. Aufiero, V. De Rosa et al. 2006. Differential regulation of metabolic, neuroendocrine, and immune function by leptin in humans. Proceedings of the National Academy of Sciences USA 103:8481-8486.

Chard, T. 1993. Pacental radar. Journal of Endocrinology 138:177-179.

Charlesworth, B. 1994, Evolution in age-structured populations. Cambridge, UK, Cambridge University Press.

Chen, Z., P. Telfier, A. Gettie, P. Reed, L. Zhang, D. D. Ho, and P. A. Marx. 1996. Genetic characterization of new west african simian immunodeficiency virus sivsm: Geographic clustering of household-derived siv strains with human immunodeficiency virus type 2 subtypes and genetically diverse viruses from a single feral sooty mangabey troop. Journal of Virology 70:3617-3627.

Chi, P. B., P. Duggai, W. H. L. Kao, R. A. Mathias, A. V. Grant, M. L. Stockton, J. G. N. Garcia et al. 2006. Comparison of snp tagging methods using empirical data: Association study of 713 snps on chromosome 12q14.3-12q24.21 for asthma and total serum ige in an african caribbean population. Genetic Epidemiology 30:609-619.

Chimpanzee Sequencing and Analysis Consortium. 2005. Initial sequence of the chimpanzee genome and comparison with the human genome. Nature 437:69-87.

Chinese SARS Molecular Epidemiology Consortium. 2004. Molecular evolution of the sars coronavirus during the course of the sars epidemic in china. Science 303:1666-1669.

Choi, Y. H., J. H. Kim, D. K. Kim, J. W. Kim, D. K. Kim, M. S. Lee, C. H. Kim et al. 2003. Distributions of ace and apoe polymorphisms and their relations with dementia status in korean centenarians. Journal of Gerontology A: Biological Sciences and Medical Sciences 58:227-231.

Chong, S., and E. Whitelaw. 2004. Epigenetic germline inheritance. Current Opinion in Genetics & Development 14:692-696.

Choudhry, S., N. E. Coyle, H. Tang, K. Salari, D. Lind, S. L. Clark, H. J. Tsai et al. 2006. Population stratification confounds genetic association studies among latinos. Human Genetics 118:652-664.

Choudhury, S. R., and L. A. Knapp. 2001. Human reproductive failure ii: Immunogenetic and interacting factors. Human Reproduction Update 7:135-160.

Chowell, G., N. W. Hengartner, C. Castillo-Chavez, P. W. Fenimore, and J. M. Hyman. 2004. The basic reproductive number of ebola and the effects of public health measures: The cases of congo and uganda. Journal of Theoretical Biology 229:119-126.

Chown, S. L., B. J. Sinclair, H. P. Leinaas, and K. J. Gaston. 2004. Hemispheric asymmetries in biodiversity – a serious matter for ecology. PLoS Biology 2:e406.

Cianciotto, N. P., and N. B. Groman. 1997. Characterization of bacteriophages from tox-containing, non-toxigenic isolates of corynebacterium diphtheriae. Microbial Pathogenesis 22:343-351.

Cicognani, A., R. Alessandroni, A. Pasini, P. Pirazzoli, A. Cassio, E. Barbieri, and E. Cacciari. 2002. Low birth weight for gestational age and subsequent male gonadal function. Journal of Pediatrics 141:376-379.

Clapp, J. F., and E. L. Capeless. 1990. Neonatal morphometrics after endurance exercise during pregnancy. American Journal of Obstetrics and Gynecology 163:1805-1611.

Clark, A. G. 1990. Inference of haplotypes from pcr-amplified samples of diploid populations. Molecular Biology and Evolution 7:111-122.

—. 2004. The role of haplotypes in candidate gene studies Genetic Epidemiology 27:321-333.

Clark, A. G., E. Boerwinkle, J. Hixson, and C. F. Sing. 2005. Determinants of the success of whole-genome association testing. Genome Research 15:1496-1502.

Clark, A. G., M. T. Hubisz, C. D. Bustamente, S. H. Williamson, and R. Nielsen. 2005. Ascertainment bias in studies of human genome-wide polymorphism. Genome Research 15:1463-1467.

Clarke, J. 1994. The meaning of menstruation in the elimination of abnormal embryos. Human Reproduction 9:1204-1207.

Cleaveland, S., M. K. Laurensen, and L. H. Taylor. 2001. Diseases of humans and their domestic mammals: Pathogen characteristics, host range and the risk of emergence. Philosophical Transactions of the Royal Society of London B 356:991-999.

Clevers, H. 2005. Stem cells, asymmetric division and cancer. Nature Genetics 37:1027-1028.

Cliff, A. D., P. Haggett, and R. Smallman, M. 1993, Measles: An historical geography of a major human viral disease, from global expansion to local retreat, 1840-1990. Oxford, Blackwell Publishers.

Coffey, D. S. 2001. Similarities of prostate and breast cancer: Evolution, diet, and estrogens. Urology 57:31-38.

Cohan, F. M. 2002. What are bacterial species? Annual Review of Microbiology 56:457-487.

Cohen, J. C., R. S. Kiss, A. Pertsemlidid, Y. L. Marcel, R. McPherson, and H. H. Hobbs. 2004. Multiple rare alleles contribute to low plasma levels of hdl cholesterol. Science 305:869-872.

Coldman, A. J., and J. H. Goldie. 1986. A stochastic model for the origin and treatment of tumors containing drug-resistant cells. Bulletin of Mathematical Biology 48:279-292.

Colegrave, N., J. S. Kotiaho, and J. L. Tomkins. 2002. Mate choice or polyandry: Reconciling genetic compatibility and good genes sexual selection. Evolutionary Ecology Research 4:911-917.

Conrad, D. F., M. Jakobsson, G. Coop, X. Wen, J. D. Wall, N. A. Rosenberg, and J. K. Pritchard. 2006. A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nature Genetics 38:1251-1260.

Cooper, B., and M. Lipsitch. 2004. The analysis of hospital infection data using hidden markov models. Biostatistics 5:223-237.

Cooper, B. S., G. F. Medley, S. P. Stone, C. C. Kibbler, B. D. Cookson, J. A. Roberts, G. Duckworth et al. 2004. Methicillin-resistant staphylococcus aureus in hospitals and the community: Stealth dynamics and control catastrophes. Proceedings of the National Academy of Sciences USA 101:10223-10228.

Corbo, R. M., and R. Scacchi. 1999. Apolipoprotein e (apoe) allele distribution in the world. Is apoe*4 a 'thrifty' allele? . Annals of Human Genetics 63:301-310.

Corbo, R. M., L. Ulizzi, R. Scacchi, Martinez-Labarga, and G. F. De Stefano. 2004. Apolipoprotein e polymorphism and fertility: A study in pre-industrial populations. Molecular Human Reproduction 10:617-620.

Cordain, L. 2007. Implications of plio-pleistocene hominin diets for modern humans, Pages 363-383 in P. Ungar, ed. Evolution of the human diet: The known, the unknown, and the unknowable Oxford, Oxford University Press.

Cordain, L., J. Brand-Miller, S. B. Eaton, N. Mann, S. H. A. Holt, and J. D. Speth. 2000. Plant to animal subsistence ratios and macronutrient energy estimations in world-wide hunter-gatherer diets. American Journal of Clinical Nutrition 71:682-692.

Cordain, L., S. B. Eaton, J. Brand-Miller, N. Mann, and K. Hill. 2002. The paradoxical nature of hunter-gatherer diets: Meat-based, yet non-atherogenic. European Journal of Clinical Nutrition 56:S42-S52.

Cordain, L., B. A. Watkins, G. L. Florant, M. Kelher, L. Rogers, and Y. Li. 2002. Fatty acid analysis of wild ruminant tissues: Evolutionary implications for reducing diet-related chronic disease. European Journal of Clinical Nutrition 56:181-191.

Corder, E. H., H. Basun, L. Fratiglioni, Z. Guo, L. Lannfelt, M. Viitanen, L. S. Corder et al. 2000. Inherited frailty. Apoe alleles determine survival after a diagnosis of heart disease or stroke at ages 85+. Annals of the New York Academy of Sciences 908:295-298.

Corder, E. H., A. M. Saunders, W. J. Strittmatter, D. E. Schmechel, P. C. Gaskell, G. W. Small, A. D. Roses et al. 1993. Gene dose of apolipoprotein e type 4 allele and the risk of alzheimer's disease in late onset families. Science 261:921-923.

Cosgrove, S. E. 2006. The relationship between antimicrobial resistance and patient outcomes: Mortality, length of hospital stay, and health care costs. Clinical Infectious Diseases 42 Suppl 2:S82-89.

Costa, L. G., and D. L. Eaton. 2006, Gene–environment interactions: Fundamentals of ecogenetics. Hoboken, John Wiley & Sons.

Cotchin, E. 1977. A general survey of tumours in the horse. Equine Veterinary Journal 9:16-21.

Covacci, A., J. L. Telford, G. D. Giudice, J. Parsonnet, and R. Rappuoli. 1999. Helicobacter pylori virulence and genetic geography. Science 284:1328-1333.

Coyne, K. P., B. R. D. Jones, A. Kipar, J. Chantrey, C. J. Porter, P. J. Barber, S. Dawson et al. 2006. Lethal outbreak of disease associated with feline calicivirus infection in cats. Veterinary Record 158:544-550.

Coyne, M. J., K. G. Weinacht, C. M. Krinos, and L. E. Comstock. 2003. Mpi recombinase globally modulates the surface architecture of a human commensal bacterium. Proceedings of the National Academy of Sciences USA 100:10446-10451.

Crandall, K. A. 1995. Intraspecific phylogenetics: Support for dental transmission of human immunodeficiency virus. Journal of Virology 69:2351-2356.

Crespi, B., and K. Summers. 2005. Evolutionary biology of cancer. Trends in Ecology and Evolution 20:545-552.

Crimmins, E. M., and C. E. Finch. 2006. Infection, inflammation, height, and longevity. Proceedings of the National Academy of Sciences USA 103:498-503.

Cronk, L. 2000. Female-biased parental investment and growth performance among the mukogodo, Pages 203-221 in L. Cronk, N. Chagnon, and W. Irons, eds. Adaptation and human behavior: An anthropological perspective New York, Aldine de Gruyter.

Cronk, L., N. Chagnon, and W. Irons. 2000, Adaptation and human behavior: An anthropological perspective New York, Aldine de Gruyter.

Crow, J. F., and M. Kimura. 1970, An introduction to population genetics theory. New York, Harper & Row.

Crump, J. A., S. P. Luby, and E. D. Mintz. 2004. The global burden of typhoid fever. Bulletin of the World Health Organization 82:346-353.

Cummings, C., and H. Y. Zoghby. 2000. Fourteen and counting: Unraveling trinuclotide repeat diseases Human Molecular Genetics 9:909-916.

Cummings, C. A., M. M. Brinig, P. W. Lepp, S. van de Pas, and D. A. Relman. 2004. Bordetella species are distinguished by patterns of substantial gene loss and host adaptation. Journal of Bacteriology 186:1484-1492.

Currat, M., L. Excoffier, W. Maddison, S. P. Otto, N. Ray, M. C. Whitlock, and S. yeaman. 2006. Comment on "Ongoing adaptive evolution of aspm, a brain size determinant in homo sapiens" And "Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans". Science 313:172.

Cutolo, M., S. Capellino, A. Sulli, B. Serioli, M. E. Secchi, B. Villaggio, and R. H. Straub. 2006. Estrogens and autoimmune diseases. Annals of the New York Academy of Sciences 1089:538-547.

Daan, S., C. Dijkstra, and J. M. Tinbergen. 1990. Family planning in the kestrel (falco tinnunculus): The ultimate control of covariation of laying date and clutch size. Behavior 114:83-116.

Dabbs, J. M., Jr. 1996. Testosterone, aggression, and delinquency, Pages 179-190 in C. Kelly, ed. Pharmacology, biology, and clinical applications of androgens. New York, Wiley-Liss, Inc.

Dagan, R., and M. Lipsitch. 2004. Changing the ecology of pneumococci with antibiotics and vaccines, Pages 427 in E. I. Tuomanen, ed. The pneumococcus. Washington, D.C., ASM Press.

Daly, M., and M. Wilson. 1980. Discriminative parental solicitude: A biological perspective. Journal of Marriage and the Family 42:277-288.

—. 1983, Sex, evolution and behavior. Boston, Willard Grant Press.

—. 1985. Child abuse and the risks of not living with both parents. Ethology and Sociobiology 6:197-211.

—. 1988. Evolutionary social psychology and family homicide. Science 242:519-524.

—. 2001. An assessment of some proposed exceptions to the phenomenon of nepotistic discrimination against stepchildren. Annales Zoologici Fennici 38:287-296.

Daly, M., M. Wilson, and S. J. Weghorst. 1982. Male sexual jealousy. Ethology and Sociobiology 3:11-27.

Daly, M. J., J. D. Rioux, S. F. Shaffner, T. J. Hudson, and E. S. Lander. 2001. High resolution haplotype structure in the human genome. Nature Genetics 29:229-232.

Damjanova, I., A. Toth, J. Paszti, A. Bauernfeind, and M. Fuzi. 2006. Nationwide spread of clonally related ctx-m-15-producing multidrug-resistant klebsiella pneumoniae strains in hungary. European Journal of Clinical Microbiology and Infectious Diseases 25:275-278.

Damond, F., M. Worobey, P. Campa, I. Farfara, G. Colin, S. Matheron, F. Brun-Vezinet et al. 2004. Identification of a highly divergent hiv type 2 and proposal for a change in hiv type 2 classification. AIDS Research and Human Retroviruses 20:666-672.

Daron, G. H. 1936. The arterial pattern of the tunica mucosa of the uterus in macacus rhesus. American Journal of Anatomy 58:349-419.

Darwin, C. 1871, The descent of man and selection in relation to sex. London, John Murray.

Das Gupta, M. 1987. Selective discrimination against female children in india. Population and Development Review 13:77-101.

Dattani, M. T. 2005. Growth hormone deficiency and combined pituitary hormone deficiency: Does the genotype matter? Clinical Endocrinology 63:121-130.

Davies, J. K., and P. Reeves. 1975. Genetics of resistance to colicins in escherichia coli k-12: Cross-resistance among colicins of group a. Journal of Bacteriology 123:102-117.

Davison, F., and V. Nair. 2004. Marek’s disease. An evolving problem. London, Elsevier Academic Press.

Dawkins, R. 1976, The selfish gene. Oxford, Oxford University Press.

—. 1979. Twelve misunderstandings of kin selection. Zeitschrift für Tierpsychologie 51:184-200.

—. 1982, The extended phenotype: The gene as the unit of selection. San Francisco, W.H. Freeman and Company.

Day, T. 2002. On the evolution of virulence and the relationship between various measures of mortality. Proceedings of the Royal Society B 269:1317-1323.

D'Costa, V. M., K. M. McGrann, D. W. Hughes, and G. D. Wright. 2006. Sampling the antibiotic resistome. Science 311:374-377.

de Bakker, P. I. W., N. P. Burtt, R. R. Graham, C. Giuducci, R. Yelensky, J. A. Drake, T. Bersaglieri et al. 2006. Transferability of tag snps in genetic association studies in multiple populations. Nature Genetics 38:1298-1303.

de Bruin, J. P., R. G. Gosden, C. E. Finch, and B. M. Leaman. 2004. Ovarian aging in two species of long-lived rockfish, sebastes aleutianus and s. Alutus. Biology of Reproduction 71:1036-1042.

de Bruin, N. C., K. A. M. van Velthoven, M. de Ridder, T. Stijnen, R. E. Juttmann, H. J. Degenhart, and H. K. A. Visser. 1996. Standards for total body fat and fat-free mass in infants. Archives of Disease in Childhood 74:386-399.

de Heij, M. E., P. J. van den Hout, and J. M. Tinbergen. 2006. Fitness cost of incubation in great tits (parus major) is related to clutch size. Proceedings of the Royal Society B 273:2353-2361.

de Jong, J. C., D. J. Smith, A. S. Lapedes, I. Donatelli, L. Campitelli, G. Barigazzi, K. Van Reeth et al. 2007. Antigenic and genetic evolution of swine influenza a(h3n2) viruses in europe. Journal of Virology in press.

de la Rochebrochard, E., J. de Mouzon, F. Thepot, and P. Thonneau. 2006. Fathers over 40 and increased failure to conceive: The lessons of in vitro fertilization in france. Fertility and Sterility 85:1420-1424.

De La Vega, F. M., H. Isaac, A. Collins, C. R. Scafe, B. V. Halldorsson, X. Su, R. A. Lippert et al. 2005. The linkage disequilibrium maps of three human chromosomes across four populations reflect their demographic history and a common underlying recombination pattern. Genome Research 15:454-462.

de Roode, J. C., R. Pansini, S. J. Cheesman, M. E. H. Helinski, S. Huijben, A. R. Wargo, A. S. Bell et al. 2005. Virulence and competitive ability in genetically diverse malaria infections. Proceedings of the National Academy of Sciences USA 102:7624-7628.

Deitsch, K. W., R. E. Moxon, and T. E. Wellems. 1997. Shared themes of antigenic variation and virulence in bacteria, protozoa and fungal infections. Microbiology and Molecular Biology Reviews 61:281-293.

Deng, W., V. Burland, G. Plunkett, 3rd, A. Boutin, G. F. Mayhew, P. Liss, N. T. Perna et al. 2002. Genome sequence of yersinia pestis kim. Journal of Bacteriology 184:4601-4611.

Dennehy, J. J., N. A. Friedenberg, R. D. Holt, and P. E. Turner. 2006. Viral ecology and the maintenance of novel host use. The American Naturalist 167:429-439.

Dennehy, J. J., N. A. Friedenberg, Y. W. Yang, and P. E. Turner. 2007. Virus population extinction via ecological traps. Ecology Letters 10:230-240.

Denoël, P., F. Godfroid, N. Guiso, H. Hallander, and J. Poolman. 2005. Comparison of acellular pertussis vaccines-induced immunity against infection due to bordetella pertussis variant isolates in a mouse model. Vaccine 23:5333-5341.

Depardieu, F., M. G. Bonora, P. E. Reynolds, and P. Courvalin. 2003. The vang glycopeptide resistance operon from enterococcus faecalis revisited. Molecular Microbiology 50:931-948.

Depardieu, F., and P. Courvalin. 2005. Glycopeptide resistance in enterococci, Pages 570 in D. G. White, M. N. Alekshun, and P. F. McDermott, eds. Frontiers in antimicrobial resistance: A tribute to stuart b. Levy. Washington, D.C., 2005.

Depardieu, F., M. Kolbert, H. Pruul, J. Bell, and P. Courvalin. 2004. Vand-type vancomycin-resistant enterococcus faecium and enterococcus faecalis. Antimicrobial Agents and Chemotherapy 48:3892-3904.

DePinho, R. A. 2000. The age of cancer. Nature 408:248-254.

Deresinski, S. 2005. Methicillin-resistant staphylococcus aureus: An evolutionary, epidemiologic, and therapeutic odyssey. Clinical Infectious Diseases 40:562-573.

Devlin, B., and N. Risch. 1995. A comparison of linkage disequilibrium measures for fine scale mapping. Genomics 29:311-322.

Devlin, B., and K. Roeder. 1999. Genomic control for association studies. Biometrics 5:997-1004.

Dewey, K. G., C. A. Lovelady, L. A. Nommsen-Rivers, M. A. McCrory, and B. Lonnerdal. 1994. A randomized study of the effects of aerobic exercise by lactating women on breast-milk volume and composition. New England Journal of Medicine 330:449-453.

Di Giulio, D. B., and P. B. Eckburg. 2004. Human monkeypox: An emerging zoonosis. The Lancet Infectious Diseases 4:15-25.

Diamond, J. 2002. Evolution, consequences and future of plant and animal domestication. Nature 418:700-707.

Dieckman, U., H. Metz, M. W. Sabelis, and K. Sigmund. 2002. Virulence management: The adaptive dynamics of host-parasite interactions. Cambridge, University Press.

Dieckmann, U., J. A. J. Metz, M. W. Sabelis, and K. Sigmund. 2005, Adaptive dynamics of infectious diseases: In pursuit of virulence management. Cambridge, Cambridge University Press.

Dillin, A., A. L. Hsu, N. Arantes-Oliveira, J. Lehrer-Graiwer, H. Hsin, A. G. Fraser, R. S. Kamath et al. 2002. Rates of behavior and aging specified by mitochondrial function during development. Science 298:2398-2401.

Ding, C., and C. R. Cantor. 2003. Direct molecular haplotyping of long-range genomic DNA with m1-pcr. Proceedings of the Natural Academy of Sciences USA 100:7449-7453.

Doak, C. M., L. S. Adair, M. Bentley, C. Monteiro, and B. M. Popkin. 2005. The dual burden household and the nutrition transition paradox. International Journal of Obesity 29:129-136.

Doblhammer, G., and J. Oeppen. 2003. Reproduction and longevity among the british peerage: The effect of frailty and health selection. Proceedings of the Royal Society B 270:1541-1547.

Dobrindt, U., B. Hochhut, U. Hentschel, and J. Hacker. 2004. Genomic islands in pathogenic and environmental microorganisms. Nature Reviews Microbiology 2:414-424.

Dobson, A. P. 2005. Virology. What links bats to emerging infectious diseases? Science 310:628-629.

Dobson, A. P., and J. Foufopoulos. 2001. Emerging infectious pathogens of wildlife. Philosophical Transactions of the Royal Society of London B 356:1001-1012.

Dobzhansky, T. 1970, Genetics of the evolutionary process. New York, Columbia University Press.

Doll, R. 1978. An epidemiological perspective of the biology of cancer. Cancer Research 38:3573-3583.

Donehower, L. A. 2005. P53: Guardian and suppressor of longevity? Experimental Gerontology 40:7-9.

Donham, K. J. 1985. Zoonotic disease of occupational significance in agriculture: A review. International Journal of Zoonoses 12:163-191.

Doolittle, W. F., and R. T. Papke. 2006. Genomics and the bacterial species problem. Genome Biology 7:116.

Dorak, M. T., T. Lawson, H. K. G. Machulla, K. I. Mills, and A. K. Burnett. 2002. Increased heterozygosity for mhc class ii lineages in newborn males. Genes And Immunity 3:263-269.

Downing, J. E. G., and J. A. Miyan. 2000. Neural immunoregulation: Emerging roles for nerves in immune homeostasis and disease. Immunology Today 21:281-289.

Drake, A. J., B. R. Walker, and J. R. Seckl. 2005. Intergenerational consequences of fetal programming by in utero exposure to glucocorticoids in rats. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology 288:R34-38.

Drake, J. W. 1991. A constant rate of spontaneous mutation in DNA-based microbes. Proceedings of the National Academy of Sciences USA 88:7160-7164.

Dronamraju, K. R. 2004, Infectious disease and host-pathogen evolution. Cambridge, Cambridge University Press.

Drumm, B., G. I. Perez-Perez, M. J. Blaser, and P. M. Sherman. 1990. Intrafamilial clustering of helicobacter pylori infection. New England Journal of Medicine 322:359-363.

Duffy, S., P. E. Turner, and C. L. Burch. 2006. Pleiotropic costs of niche expansion in the rna bacteriophage φ6. Genetics 172:751-757.

Duffy, V. B., A. C. Davidson, J. R. Kidd, K. K. Kidd, W. C. Speed, A. J. Pakstis, D. R. Reed et al. 2004. Bitter receptor gene (tas2r38), 6-n-propylthiouracil (prop) bitterness and alcohol intake. Alcoholism: Clinical & Experimental Research 28:1629-1637.

Duffy, V. B., J. M. Peterson, and L. M. Bartoshuk. 2004. Associations between taste genetics, oral sensation and alcohol intake. Physiology & Behavior 82:435-445.

Dufour, D. L. 1983. Nutrition in the northwest amazon: Household dietary intake and time-energy expenditure, Pages 329-355 in R. B. Hames, and W. T. Vickers, eds. Adaptive responses of native amazonians New York, Academic Press.

Dufour, D. L., and M. L. Sauther. 2002. Comparative and evolutionary dimensions of the energetics of human pregnancy and lactation American Journal of Human Biology 14:603-608.

Dunbar, R. I. M. 1996, Grooming, gossip, and the evolution of language. Cambridge, Harvard University Press.

Dunn, G. P., A. T. Bruce, H. Ikeda, L. J. Old, and R. D. Schreiber. 2002. Cancer immunoediting: From immunosurveillance to tumor escape. Nature Immunology 3:991-998.

Dunn, G. P., L. J. Old, and R. D. Schreiber. 2004. The immunobiology of cancer immunosurveillance and immunoediting. Immunity 21:137-148.

Dunne, D. W., and A. Cooke. 2005. A worm's eye view of the immune system: Consequences for evolution of human autoimmune disease. Nature Reviews Immunology 5:420-426.

Durham, W. H. 1991, Coevolution : Genes, culture, and human diversity. Stanford, Stanford University Press.

Duvekot, J. J., C. E.C., F. A. A. Pieters, P. P. C. A. Menheere, and L. L. H. Peeters. 1993. Early pregnancy changes in hemodynamics and volume homeostasis are consecutive adjustments triggered by a primary fall in systemic vascular tone. American Journal of Obstetrics and Gynecology 169:1382-1392.

Dwyer, C., and N. Strickland. 1994. Supplementation of a restricted maternal diet with protein or carbohydrate alone prevents a reduction in fetal muscle fibre number in the guinea-pig. British Journal of Nutrition 72:173-180.

Dykhuizen, D. E. 2005. Species numbers in bacteria. Proceedings of the California Academy of Sciences 56 (supplement 1) 62-71.

Dykhuizen, D. E., and G. Baranton. 2001. The implications of a low rate of horizontal transfer in borrelia. Trends in Microbiology 9:344-350.

Eaton, S. B., and M. Konner. 1985. Paleolithic nutrition. A consideration of its nature and current implications. New England Journal of Medicine 312:283-289.

Eaton, S. B., M. Konner, and M. Shostak. 1988. Stone agers in the fast lane. Chronic degenerative diseases in evolutionary perspective. American Journal of Medicine 84:739-749.

Eaton, S. B., M. C. Pike, R. V. Short, N. C. Lee, J. Trussell, R. A. Hatcher, J. W. Wood et al. 1994. Women's reproductive cancers in evolutionary context. Quarterly Review in Biology 69:353-367.

Eaton, S. B., B. I. Strassman, R. M. Nesse, J. V. Neel, P. W. Ewald, G. C. Williams, A. B. Weder et al. 2002. Evolutionary health promotion. Preventive Medicine 34:109-118.

Ebert, D. 1994. Virulence and local adaptation of a horizontally transmitted parasite. Science 265:1084-1086.

—. 1998. Experimental evolution of parasites. Science 282:1432-1435.

Ebert, D., and J. J. Bull. 2003. Challenging the trade-off model for the evolution of virulence: Is virulence management feasible? Trends in Microbiology 11:15-20.

—. 2003. Response to: Eliot and gandon and day: Revisiting virulence management. Trends in Microbiology 11:208-209.

Ebert, D., H. J. Carius, T. Little, and E. Decaestecker. 2004. The evolution of virulence when parasites cause host castration and gigantism. American Naturalist 164:S19-S32.

Ebert, D., and W. D. Hamilton. 1996. Sex against virulence: The coevolution of parasitic diseases. Trends in Ecology and Evolution 11:79-81.

Ebert, D., and E. A. Herre. 1996. The evolution of parasitic diseases. Parasitology Today 12:96-100.

Ebert, D., and K. L. Mangin. 1997. The influence of host demography on the evolution of virulence of a microsporidian gut parasite. Evolution 51:1828-1837.

Ebert, D., C. D. Zschokke-Rohringer, and H. J. Carius. 1998. Within and between population variation for resistance of daphnia magna to the bacterial endoparasite pasteuria ramosa. Proceedings of the Royal Society B 265:2127-2134.

Eichelbaum, M., M. Ingelman-Sundberg, and W. E. Evans. 2006. Pharmacogenomics and individualized drug therapy. Annual Review of Medicine 57:119-137.

Ekblom, R., S. A. Saether, M. Grahn, P. Fiske, J. A. Kalass, and J. Hoglund. 2004. Major histocompatibility complex variation and mate choice in a lekking bird, the great snipe (gallinago media). Molecular Ecology 13:3821-3828.

Elia, M. 1992. Organ and tissue contribution to metabolic rate, Pages 61-79 in J. Kinney, and H. N. Tucker, eds. Energy metabolism: Tissue determinants and cellular corollaries New York, Raven Press.

Ellison, P. T. 1990. Human ovarian function and reproductive ecology: New hypotheses. American Anthropologist 92:933-952.

—. 1995. Breastfeeding, fertility, and maternal condition in K. A. Dettwyler, and P. Stuart-Macadam, eds. Breastfeeding: Biocultural perspectives. Hawthorne, NY, Aldinne de Gruyter.

—. 1996. Developmental influences on adult ovarian function. American Journal of Human Biology 8:725-734.

—. 1999. Reproductive ecology and reproductive cancers, Pages 184-209 in C. Panter-Brick, and C. Worthman, eds. Hormones, health, and behavior: A socio-ecological and lifespan perspective. Cambridge, Cambridge University Press.

—. 2001, On fertile ground. Cambridge, MA, Harvard University.

—. 2003. Energetics and reproductive effort. American Journal of Human Biology 15:342-351.

Ellison, P. T., R. G. Bribiescas, G. R. Bentley, B. C. Campbell, S. F. Lipson, C. Panter-Brick, and K. Hill. 2002. Population variation in age-related decline in male salivary testosterone. Human Reproduction 17:3251-3253.

Ellison, P. T., C. Valeggia, and D. S. Sherry. 2005. Human birth seasonality., Pages 379-400 in D. K. Brockman, and C. P. van Schaik, eds. Seasonality in primates: Studies of living and extinct human and non-human primates. Cambridge, Cambridge University Press.

Ellison, P. T., and C. R. Valeggia. 2003. C-peptide levels and the duration of lactational amenorrhea. Fertility and Sterility 80:1279-1280.

Elomaa, A., A. Advani, D. Donnelly, M. Antila, J. Mertsola, H. Hallander, and Q. S. He. 2005. Strain variation among bordetella pertussis isolates in finland, where the whole-cell pertussis vaccine has been used for 50 years. Journal of Clinical Microbiology 43:3681-3687.

Elton, C. S. 1958, Ecology of invasions by animals and plants. London, Methuen.

Emery Thompson, M. 2005. Reproductive endocrinology of wild female chimpanzees (pan troglodytes schweinfurthii): Methodological considerations and the role of hormones in sex and conception. American Journal of Primatology 67:137-158.

Enattah, N. S., S. T., E. Savilahti, J. D. Terwilliger, L. Peltonen, and I. Jarvela. 2002. Identification of a variant associated with adult-type hypolactasia. Nature Genetics 30:233-237.

Eng, C. 2000. Multiple endocrine neoplasia type 2 and the practice of molecular medicine. Reviews of Endocrine and Metabolic Disorders 1:283-290.

Ennattha, N. S., T. Sahi, E. Savilahti, J. D. Terwilliger, L. Peltonen, and L. Jarvela. 2002. Identification of a variant associated with adult-type hypolactasia. Nature Genetics 38:9-11.

Enright, M. C., B. G. Spratt, A. Kalia, J. H. Cross, and D. E. Bessen. 2001. Multilocus sequence typing of streptococcus pyogenes and the relationships between emm type and clone. Infection and Immunity 69:2416-2427.

Epstein, P. R., E. Chivian, and K. Frith. 2003. Emerging diseases threaten conservation. Environmental Health Perspectives 111:506-507.

Erickson, C. K. 1992. A pharmacologist’s opinion alcoholism: The disease debate needs to stop. Alcohol and Alcoholism 27:325-328.

Eriksson, J. G., T. J. Forsen, C. Osmond, and D. J. P. Barker. 2003. Pathways of infant and childhood growth that lead to type 2 diabetes. Diabetes Care 26 3006-3010.

Eriksson, J. G., V. Lindi, M. Uusitupa, T. J. Forsen, M. Laakso, C. Osmond, and D. J. Barker. 2002. The effects of the pro12ala polymorphism of the peroxisome proliferator-activated preceptor-gamma2 gene on insulin sensitivity and insulin metabolism interact with size at birth. Diabetes 51 2321-2324.

Eshel, I., and M. W. Feldman. 1991. The handicap principle in parent-offspring conflict: Comparison of optimality and population genetic analyses. The American Naturalist 137:167-185.

Evans, D. M., and L. R. Cardon. 2005. A comparison of linkage disequilibrium patterns and estimated population recombination rates across multiple populations. American Journal of Human Genetics 76:681-687.

Evans, P. D., S. L. Gilbert, N. Mekel-Bobrov, E. J. Vallender, J. R. Anderson, L. M. Vaez-Azizi, S. A. Tishkoff et al. 2005. Microcephalin, a gene regulating brain size, continues to evolve adaptively in humans. Science 309:1717-1720.

Ewald, P. W. 1980. Evolutionary biology and the treatment of signs and symptoms of infectious disease. Journal of Theoretical Biology 86:169-176.

—. 1983. Host-parasite relations, vectors, and the evolution of disease severity. Annual Review of Ecology and Systematics 14:465-485.

—. 1994, Evolution of infectious diseases. Oxford, Oxford University Press.

—. 1996. Vaccines as evolutionary tools: The virulence-antigen strategy, Pages 1-25 in S. H. E. Kaufmann, ed. Concepts in vaccine development. Berlin, de Gruyter & Co.

—. 2002. Virulence management in humans, Pages 399-409 in U. Dieckmann, J. A. J. Metz, M. W. Sabelis, and K. Sigmund, eds. Adaptive dynamics of infectious diseases. In pursuit of virulence management. Cambridge, Cambridge University Press.

Excoffier, L., and Slatkin. 1995. Maximum likelihood estimation of molecular haplotype frequencies in a diploid population. Molecular Biology and Evolution 12:921-927.

Eyre-Walker, A., and P. D. Keightley. 1999. High genomic deleterious mutation rates in hominids. Nature 397:344-347.

Fallin, D., A. Cohen, L. Essioux, I. Chumakov, M. Blumenfeld, D. Cohen, and N. J. Shork. 2001. Genetic analysis of case control data using haplotype frequencies: Application of apoe locus variation and alzheimer’s disease. Genome Research 11:143-151.

Falush, D., C. Kraft, N. S. Taylor, P. Correa, J. G. Fox, M. Achtman, and S. Suerbaum. 2001. Recombination and mutation during long-term gastric colonization by helicobacter pylori: Estimates of clock rates, recombination size, and minimal age. Proceedings of the National Academy of Sciences USA 98:15056-15061.

Falush, D., T. Wirth, B. Linz, J. K. Pritchard, M. Stephens, M. Kidd, M. J. Blaser et al. 2003. Traces of human migrations in helicobacter pylori populations. Science 299:1582-1585.

Feil, E., G. Carpenter, and B. G. Spratt. 1995. Electrophoretic variation in adenylate kinase of neisseria meningitidis is due to inter- and intraspecies recombination. Proceedings of the National Academy of Sciences USA 92:10535-10539.

Feil, E. J., E. C. Holmes, D. E. Bessen, M. S. Chan, N. P. Day, M. C. Enright, R. Goldstein et al. 2001. Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences. Proceedings of the National Academy of Sciences USA 98:182-187.

Feldgarden, M., and M. A. Riley. 1998. High levels of colicin resistance in escherichia coli. Evolution 52:1270-1276.

—. 1999. The fitness and phenotypic effects of colicin resistance in escherichia coli k-12. Evolution 53:1019-1027.

Felsenstein, J. 1974. Evolutionary advantage of recombination. Genetics 78:737-756.

—. 1985. Phylogenies and the comparative method. American Naturalist 125:1-15.

Fenner, F., and B. Fantini. 1999, Biological control of vertebrate pests. Wallingford, UK, CABI Publishing.

Fenner, F., and P. J. Kerr. 1994. Evolution of poxviruses, including the coevolution of virus and host in myxomatosis, Pages 273-292 in S. S. Morse, ed. The evolutionary biology of viruses. New York, Raven Press.

Fenner, F., and F. N. Ratcliffe. 1965, Myxomatosis. Cambridge, Cambridge University Press.

Ferguson, N. M., D. A. T. Cummings, C. Fraser, J. C. Cajka, P. C. Cooley, and D. S. Burke. 2006. Strategies for mitigating an influenza pandemic. Nature 442:448-452.

Fernandez-Twinn, D. S., and S. E. Ozanne. 2006. Mechanisms by which poor early growth programs type-2 diabetes, obesity and the metabolic syndrome. Physiology and Behavior 88:234-243.

Feuk, L., A. R. Carson, and S. W. Scherer. 2006. Structural variation in the human genome. Nature Reviews Genetics 7:85-97.

Fields, S. J., G. Livshits, L. Sirotta, and P. Merlob. 1996. Path analysis of risk factors leading to premature birth American Journal of Human Biology 8:433-443.

Finch, C. E. 1990, Longevity, senescence, and the genome. Chicago, University of Chicago Press.

—. 2007, The biology of human longevity: Inflammation, nutrition, and aging in the evolution of lifespans. San Diego, Academic Press.

Finch, C. E., and E. M. Crimmins. 2004. Inflammatory exposure and historical changes in human life-spans. Science 305:1736-1739.

Finch, C. E., and R. M. Sapolsky. 1999. The evolution of alzheimer disease, the reproductive schedule, and apoe isoforms. Neurobiology of Aging 20:407-428.

Finch, C. E., and C. B. Stanford. 2004. Meat-adaptive genes and the evolution of slower aging in humans. Quarterly Review of Biology 79:3-50.

Finch, R. G., D. I. Pritchard, B. W. Bycroft, P. Williams, and G. S. Stewart. 1998. Quorum sensing: A novel target for anti-infective therapy. Journal of Antimicrobial Chemotherapy 42:569-571.

Finlay, B. J. 2002. Global dispersal of free-living microbial eukaryote species. Science 296:1061-1063.

Finn, C. A. 1987. Why do women and some other primates menstruate? Perspectives in Biology and Medicine 30:566-574.

—. 1996. Why do women menstruate? Historical and evolutionary review. European Journal of Obstetrics & Gynecology and Reproductive Biology 70:3-8.

Fisher, M. C., G. L. Koening, T. J. White, G. San-Blas, R. Negroni, I. Gutiérrez Alvarez, B. Wanke et al. 2001. Biogeographic range expansion into south america by coccidioides immitis mirrors new world patterns of human migration. Proceedings of the National Academy of Sciences USA 98:4558-4562.

Fisher, R. A. 1930, The genetical theory of natural selection. Oxford, Oxford University Press.

Fisher, R. A., E. B. Ford, and J. Huxley. 1939. Taste-testing the anthropoid apes. Nature 144:750.

Fisher, R. E. 2000. The primate appendix: A reassessment. The Anatomical Record: The New Anatomist 261:228-236.

Fitch, W. M. 1995. Uses for evolutionary trees. Philosophical Transactions of the Royal Society B 349:93-102.

FitzSimons, D., G. Francois, A. Hall, B. McMahon, A. Meheus, A. Zanetti, B. Duval et al. 2005. Long-term efficacy of hepatitis b vaccine, booster policy, and impact of hepatitis b virus mutants. Vaccine 23:4158-4166.

Flannagan, S. E., J. W. Chow, S. M. Donabedian, W. J. Brown, M. B. Perri, M. J. Zervos, Y. Ozawa et al. 2003. Plasmid content of a vancomycin-resistant enterococcus faecalis isolate from a patient also colonized by staphylococcus aureus with a vana phenotype. Antimicrobial Agents and Chemotherapy 47:3954-3959.

Flannery, B., R. T. Heffernan, L. H. Harrison, S. M. Ray, A. L. Reingold, J. Hadler, W. Schaffner et al. 2006. Changes in invasive pneumococcal disease among hiv-infected adults living in the era of childhood pneumococcal immunization. Annals of Internal Medicine 144:1-9.

Flegal, K. M., M. D. Carroll, C. L. Ogden, and C. L. Johnson. 2002. Prevalence and trends in obesity among us adults. Journal of the American Medical Association 288:1723-1727.

Fleischmann, R. D., M. D. Adams, O. White, R. A. Clayton, E. F. Kirkness, A. R. Kerlavage, C. J. Bult et al. 1995. Whole-genome random sequencing and assembly of haemophilus influenzae rd. Science 269:496-512.

Flinn, M. 1981. Uterine vs. Agnatic kinship variability and associated cross-cousin marriage preferences: An evolutionary biological analysis, Pages 439-475 in R. D. Alexander, and R. D. Tinkle, eds. Natural selection and social behavior. New york, Chiron Press.

Florencio, T. T., H. S. Ferreira, J. C. Cavalcante, S. M. Luciano, and A. L. Sawaya. 2003. Food consumed does not account for the higher prevalence of obesity among stunted adults in a very-low-income population in the northeast of brazil (maceio, alagoas). European Journal of Clinical Nutrition 57:1437-1446.

Flurkey, K., J. Papaconstantinou, R. A. Miller, and D. E. Harrison. 2001. Lifespan extension and delayed immune and collagen aging in mutant mice with defects in growth hormone production. Proceedings of the National Academy of Sciences USA 98:6736-6741.

Fodde, R., J. Kuipers, C. Rosenberg, R. Smits, M. Kielman, C. Gaspar, J. H. van Es et al. 2001. Mutations in the apc tumour suppressor gene cause chromosomal instability. Nature Cell Biology 3:433-438.

Fogel, R. W. 2004, The escape from hunger and premature death, 1700-2100. Cambridge, Cambridge University Press.

Folkman, J. 2002. Role of antigenesis in tumor growth and metastasis. Seminars in Oncology 29:15-18.

Fomon, S. J., F. Haschke, E. E. Ziegler, and S. E. Nelson. 1982. Body composition of reference children from birth to age 10 years. American Journal of Clinical Nutrition 35:1169-1175.

Food and Agriculture Organization - World Health Organization - United Nations University (FAO/WHO/UNU). 1985. Energy and protein requirements. Report of joint fao/who/unu expert consultation, WHO Technical Report Series No. 724. Geneva, World Health Organization.

Forsdahl, A. 1977. Are poor living conditions in childhood and adolescence an important risk factor for arteriosclerotic heart disease? British Journal Preventative and Socical Medicine 31:91-95.

Fowler, K., and L. Partridge. 1989. A cost of mating in female fruitflies. Nature 338:760-761.

Fowler, M. E. 1987. Zoo animals and wildlife, Pages 649-662 in G. H. Theilen, and B. R. Madewell, eds. Veterinary cancer medicine. Philadelphia, Lea & Febiger.

Fox, A. L. 1932. The relationship between chemical constitution and taste. Proceedings of the National Academy of Sciences USA 18:115-120.

Franceschi, S., and C. La Vecchia. 1994. Thyroid cancer, Pages 393-414 in R. Doll, J. F. J. Fraumeni, and C. S. Muir, eds. Trends in cancer incidence and mortality. Cold Spring Harbor, Cold Spring Harbor Laboratory Press.

François, G., M. Kew, P. Van Damme, M. J. Mphahlele, and A. Mehues. 2001. Mutant hepatitis b viruses: A matter of academic interest only or a problem with far-reaching implications. Vaccine 19:3799-3815.

Frank, H. G., and P. Kaufmann. 2000. Nonvillous parts and trophoblast invasion, Pages 171-272 in K. Benirschke, and P. Kaufmann, eds. Pathology of the human placenta. New York, Springer Verlag.

Frank, S. A. 1996. Models of parasite virulence. Quarterly Review of Biology 71:37-78.

—. 2004. Age-specific acceleration of cancer. Current Biology 14:242-246.

—. 2005. Age-specific incidence of inherited versus sporadic cancers: A test of the multistage theory of carcinogenesis. Proceedings of the National Academy of Sciences USA 102:1071-1075.

Fraser, C., W. P. Hanage, and B. G. Spratt. 2007. Recombination and the nature of bacterial speciation. Science 315:476-480.

Fredensborg, B. L., and R. poulkin. 2006. Parasitism shaping host life-history evolution: Adaptive responses in a marine gastropod to infection by trematodes. Journal of Animal Ecology 75:44-53.

Friedman, M. J. 1978. Erythrocytic mechanism of sickle cell resistance to malaria. Proceedings of the National Academy of Sciences USA 75:1994-1997.

Friedman, M. J., E. F. Roth, R. L. Nagel, and W. Trager. 1979. Plasmodium falciparum: Physiological interactions with the human sickle cell. Experimental Parasitology 47:73-80.

Fritz, B., C. Hallermann, J. Olert, B. Fuchs, M. Bruns, M. Aslan, S. Schmidt et al. 2001. Cytogenetic analyses of culture failures by comparative genomic hybridization (cgh) — re-evaluation of chromosome aberration rates in early spontaneous abortion. European Journal of Human Genetics 9.

Fullerton, S. M., A. G. Clark, K. M. Weiss, D. A. Nickerson, S. L. Taylor, J. H. Stengard, V. Salomaa et al. 2000. Apolipoprotein e variation at the sequence haplotype level: Implications for the origin and maintenance of a major human polymorphism. American Journal of Human Genetics 67:881-900.

Futreal, P. A., L. Coin, M. Marshall, T. Down, T. Hubbard, R. Wooster, N. Rahman et al. 2004. A census of human cancer genes. Nature Reviews Cancer 4:177-183.

Gabriel, S. B., S. F. Schaffner, H. Nguyen, J. M. Moore, J. Roy, B. Blumenstiel, J. Higgins et al. 2002. The structure of haplotype blocks in the human genome. Science 296:2225-2229.

Galan, J. E., and H. Wolf-Watz. 2006. Protein delivery into eukaryotic cells by type iii secretion machines. Nature 444:567-573.

Galis, F., and J. A. J. Metz. 2003. Anti-cancer selection as a source of developmental and evolutionary constraints. Bioessays 25:1035-1039.

Galvin, K. A. 1985. Food procurement, diet, activities and nutrition of ngisonyoka turkana pastoralists in an ecological and social contex. PhD thesis, SUNY.

—. 1992. Nutritional ecology of pastoralists in dry tropical africa. American Journal of Human Biology 4:209-221.

Gambacorti-Passerini, C. B., R. H. Gunby, R. Piazza, A. Galietta, R. Rostagno, and L. Scapozza. 2003. Molecular mechanisms of resistance to imatinib in philadelphia-chromosome-positive leukaemias. The Lancet Oncology 4:75-85.

Gandon, S., and T. Day. 2007. Evidence of parasite evolution after vaccination. Vaccine in press.

Gandon, S., M. J. Mackinnon, S. Nee, and A. F. Read. 2001. Imperfect vaccines and the evolution of pathogen virulence. Nature 414:751-756.

—. 2002. Antitoxin vaccines and pathogen virulence. Nature 417:610.

—. 2003. Imperfect vaccination: Some epidemiological and evolutionary consequences. Proceedings of the Royal Society B 270:1129-1136.

Gandon, S., M. van Baalen, and V. A. A. Jansen. 2002. The evolution of parasite virulence, superinfection, and host resistance. American Naturalist 159:658-669.

Ganusov, V. V., and R. Antia. 2006. Imperfect vaccines and the evolution of pathogens causing acute infections in vertebrates. Evolution 60:957-969.

Ganzevoort, W., A. Rep, J. I. P. de Vries, G. J. Bonsel, and H. Wolf. 2006. Prediction of maternal complications and adverse infant outcome at admission for temporizing management of early-onset severe hypertensive disorders of pregnancy. . American Journal of Obstetrics and Gynecology 195:495-503.

Gao, F., L. Yue, A. T. White, P. G. Pappas, J. Barchue, A. P. Hanson, B. M. Greene et al. 1992. Human infection by genetically diverse sivsm-related hiv-2 in west africa. Nature 358:495-499.

Garamszegi, L. Z. 2006. The evolution of virulence and host specialization in malaria parasites of primates. Ecology Letters 9:933-940.

Gardosi, J. O. 2005. Prematurity and fetal growth restriction Early Human Development 81:43-49.

Garn, S. M., G. R. Greaney, and R. W. Young. 1956. Fat thickness and growth progress during infancy. Human Biology 28:232-250.

Garrett, J. L., and M. T. Ruel. 2005. Stunted child-overweight mother pairs: Prevalence and association with economic development and urbanization. Food and Nutrition Bulletin 26:209-221.

Garrigan, D., and P. W. Hedrick. 2003. Perspective: Detecting adaptive molecular polymorphism: Lessons from the mhc. Evolution 57:1707-1722.

Garrod, A. E. 1902. The incidence of alcaptonuria: A study in chemical individuality. The Lancet 2:1616-1620.

Garsin, D. A., J. M. Villanueva, J. Begun, D. H. Kim, C. D. Sifri, S. B. Calderwood, G. Ruvkun et al. 2003. Long-lived c. Elegans daf-2 mutants are resistant to bacterial pathogens. Science 300:1921-1921.

Gaston, K. J., and T. Blackburn. 2000, Pattern and process in macroecology. London, Blackwell Publishing.

Gatenby, R. A., and E. T. Gawlinski. 1996. A reaction-diffusion model of cancer invasion. Cancer Research 56:5745-5753.

—. 2003. The glycolytic phenotype in carcinogenesis and tumor invasion: Insights through mathematical models. Cancer Research 63:3847-3854.

Gatenby, R. A., and T. L. Vincent. 2003. An evolutionary model of carcinogenesis. Cancer Research 63:6212-6220.

Gaulin, S. J. C., and J. Boster. 1990. Dowry as female competition. American Anthropologist 92:994-1005.

Gaulin, S. J. C., and M. Konner. 1979. On the natural diets of primates, including humans, Pages 1-86 in R. Wurtman, and J. Wurtman, eds. Nutrition and the brain, volume 1. New York, Raven Press.

Gavan, J. A. 1953. Growth and development of the chimpanzee; a longitudinal and comparative study. Human Biology 25:93-143.

Gavrilova, N. S., and L. Gavrilov. 2005. Human longevity and reproduction: An evolutionary perspective, Pages 59-80 in E. Voland, A. Chasiotis, and W. Schiefenhovel, eds. Grandmotherhood: The evolutionary significance of the second half of female life. New Brunswick, Rutgers University Press.

Gelman, R., R. Watson, R. Bronson, and E. Yunis. 1988. Murine chromosomal regions correlated with longevity. Genetics 118:693-704.

Gems, D., A. J. Sutton, M. L. Sundermeyer, P. S. Albert, K. V. King, M. L. Edgley, P. L. Larsen et al. 1998. Two pleiotropic classes of daf-2 mutation affect larval arrest, adult behavior, reproduction and longevity in caenorhabditis elegans. Genetics 150:129-155.

Genereux, D., and C. T. Bergstrom. 2005. Evolution in action: Understanding antibiotic resistance in J. Cracraft, and R. W. Bybee, eds. Evolutionary science and society: Educating a new generation. Washington, D.C., AIBS/BCSC.

Genin, E., C. Ober, L. Weitkamp, and G. Thomson. 2000. A robust test for assortative mating. European Journal of Human Genetics 8:119-124.

Genton, B., I. Betuela, I. Felger, F. Al-Yaman, R. F. Anders, A. Saul, L. Rare et al. 2002. A recombinant blood-stage malaria vaccine reduces plasmodium falciparum density and exerts selective pressure on parasite populations in a phase 1-2b trial in papua new guinea. Journal of Infectious Diseases 185:820-870.

Gentry, G. A., M. Lowe, G. Alford, and R. Nevins. 1988. Sequence analyses of herpesviral enzymes suggest an ancient origin for human sexual behavior. Proceedings of the National Academy of Sciences USA 85:2658-2661.

George, A. M. 2005. Multiple antibiotic resistance, Pages 570 in D. G. White, M. N. Alekshun, and P. F. McDermott, eds. Frontiers in antimicrobial resistance: A tribute to stuart b. Levy. Washington, D.C., ASM Press.

Gerdes, L. U., C. Gerdes, P. S. Hansen, I. C. Klausen, and O. Faergeman. 1996. Are men carrying the apolipoprotein epsilon 4- or epsilon 2 allele less fertile than epsilon 3 epsilon 3 genotypes? . Human Genetics 98:239-242.

Gevers, D., F. M. Cohan, J. G. Lawrence, B. G. Spratt, T. Coenye, E. J. Feil, E. Stackebrandt et al. 2005. Opinion: Re-evaluating prokaryotic species. Nature Reviews Microbiology 3:733-739.

Gibson, J., N. E. Morton, and A. Collins. 2006. Extended tracts of homozygosity in outbred human populations. Human Molecular Genetics 15:789-795.

Gillor, O., L. M. Nigro, and M. A. Riley. 2005. Genetically engineered bacteriocins and their potential as the next generation of antimicrobials. Curr Pharm Des 11:1067-1075.

Glanz, K., M. Basil, E. Maibach, J. Goldberg, and D. Snyder. 1998. Why americans eat what they do: Taste, nutrition, cost, convenience, and weight control concerns as influences on food consumption. Journal of the American Dietetic Association 98:1118-1126.

Gluckman, P. D., and M. Hanson. 2005, The fetal matrix: Evolution, development, and disease New York, Cambridge University Press.

Gluckman, P. D., and M. A. Hanson. 2006, Developmental origins of health and disease. Cambridge, Cambridge University Press.

Gluckman, P. D., M. A. Hanson, and A. S. Beedle. 2007. Early life events and their consequences for later disease: A life history and evolutionary perspective. American Journal of Human Biology 19:1-99.

Gluckman, P. D., M. A. Hanson, H. G. Spencer, and P. Bateson. 2005. Environmental influences during development and their later consequences for health and disease: Implications for the interpretation of empirical studies. Proceedings of the Royal Society B 272 671-677.

Godfrey, K. 2006. The 'developmental origins' hypothesis: Epidemiology, Pages 6 -32 in P. D. Gluckman, and M. A. Hanson, eds. Developmental origins of health and disease. Cambridge, Cambridge University Press.

Godin, G., and R. J. Shephard. 1973. Activity patterns of the canadian eskimo, Pages 193-215 in O. G. Edholm, and E. K. E. Gunderson, eds. Polar human biology. Chichester, Heinemann Books.

Godoy, D., G. Randle, A. J. Simpson, D. M. Aanensen, T. L. Pitt, R. Kinoshita, and B. G. Spratt. 2003. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, burkholderia pseudomallei and burkholderia mallei. Journal of Clinical Microbiology 41:2068-2079.

Godoy, R., V. Reyes-Garcia, E. Byron, W. R. Leonard, and V. Vadez. 2005. The effect of market economies on the well-being of indigenous peoples and on their use of renewable natural resources. Annual Review of Anthropology 34:121-138.

Goedde, H. W., and D. P. Agarwal. 1987. Genetics and alcoholism: Problems and perspectives. Progress in Clinical and Biological Research 241:3-20.

Goedde, H. W., D. P. Agarwal, and S. Harada. 1983. The role of alcohol dehydrogenase and aldehyde dehydrogenase isozymes in alcohol metabolism, alcohol sensitivity, and alcoholism. Isozymes: Current Topics in Biological and Medical Research 8:175-193.

Gogarten, J. P., W. F. Doolittle, and J. G. Lawrence. 2002. Prokaryotic evolution in light of gene transfer. Molecular Biology and Evolution 19:2226-2238.

Goldman, D., and M. A. Enoch. 1990. Genetic epidemiology of ethanol metabolic enzymes: A role for selection. World Review of Nutrition and Dietetics 63:143-160.

Goldman, J. M., and J. V. Melo. 2003. Chronic myeloid leukemia – advances in biology and new approaches to treatment. The New England Journal of Medicine 349:1451-1464.

Goldsmith, T. H. 1990. Optimization, constraint, and history in the evolution of eyes. Quarterly Review of Biology 65:281-322.

Goldstein, D. B. 2001. Islands of linkage disequilibrium. Nature Genetics 29:109-111.

Goldstein, D. B., and G. L. Cavalleri. 2005. Understanding human diversity. Nature 437:1241-1242.

Gomez, L., A. Carrascosa, D. Yeste, N. Potau, S. Rique, P. Ruiz-Cuevas, and J. Almar. 1999. Leptin values in placental cord blood of human newborns with normal intrauterine growth after 30-42 weeks of gestation. Hormone Research 51:10-14.

Gonder, M. K., J. F. Oates, T. R. Disotell, M. R. Forstner, J. C. Morales, and D. J. Melnick. 1997. A new west african chimpanzee subspecies? Nature 388:337.

Goodman, K. J., and P. Correa. 1995. The transmission of helicobacter pylori. A critical review of theeevidence. International Journal of Epidemiology 24:875-887.

Goodwin, D. W., F. Schulsinger, N. Moller, L. Hermansen, G. Winokur, and S. B. Guze. 1974. Drinking problems in adopted and non-adopted sons of alcoholics. Archives of General Psychiatry 31:164-169.

Gorre, M. E., M. Mohammed, K. Ellwood, N. Hsu, R. Paquette, P. N. Rao, and C. L. Sawyers. 2001. Clinical resistance to sti-571 cancer therapy caused by bcr-abl gene mutation or amplification. Science 293:876-880.

Gottlieb, M. S., R. Schroff, H. M. Schanker, J. D. Weisman, P. T. Fan, R. A. Wolf, and A. Saxon. 1981. Pneumocystis carinii pneumonia and mucosal candidiasis in previously healthy homosexual men: Evidence of a new acquired cellular immunodeficiency. The New England Journal of Medicine 305:1425-1431.

Graham, A. L., J. E. Allen, and A. F. Read. 2005. Evolutionary causes and consequences of immunopathology. Annual Review of Ecology Evolution and Systematics 36:373-397.

Graham, D. Y., A. R. Opekun, M. S. Osato, H. M. T. El-Zimaity, C. K. Lee, Y. Yamaoka, W. A. Qureshi et al. 2004. Challenge model for helicobacter pylori infection in human volunteers. Gut 53:1235-1243.

Graham, J. 1992, Cancer selection: The new theory of evolution. Lexington, Aculeus.

Grant, S. F. A., G. Thorleifsson, I. Reynisdottir, R. Benediktsson, A. Manolescu, J. Sainz, A. Helgason et al. 2006. Variant of transcript factor 7-like 2(tcf7l2) gene confers risk of type 2 diabetes. Nature Genetics 38:320-323.

Gray, P. B., S. M. Kahlenberg, E. S. Barrett, S. F. Lipson, and P. T. Ellison. 2002. Marriage and fatherhood are associated with lower testosterone in males. Evolution and Human Behavior 23:192-201.

Gray, P. B., C. F. Yang, and H. G. Pope, Jr. 2006. Fathers have lower salivary testosterone levels than unmarried men and married non-fathers in beijing, china. Proceedings of the Royal Society B 273:333-339.

Greaves, M. 1996. Is telomerase activity in cancer due to selection of stem cells and differentiation arrest? Trends in Genetics 12:127-128.

—. 2000, Cancer. The evolutionary legacy. Oxford, Oxford University Press.

—. 2002. Cancer causation: The darwinian downside of past success? The Lancet Oncology 3:244-251.

—. 2006. Infection, immune responses and the aetiology of childhood leukaemia. Nature Reviews Cancer 6:193-203.

Greaves, M. F. 1997. Aetiology of acute leukaemia. The Lancet 349:344-349.

—. 2000. Evolution, immune response, and cancer. Lancet 356:1034.

Greaves, M. F., and J. Wiemels. 2003. Origins of chromosome translocations in childhood leukaemia. Nature Reviews Cancer 3:639-649.

Grech, K. 2006. The ecology and evolution of malaria: Laboratory studies of plasmodium chabaudi and its rodent and insect hosts. PhD thesis, University of Edinburgh.

Greene, I. P., E. Wang, E. R. Deardorff, R. Milleron, E. Domingo, and S. C. Weaver. 2005. Effect of alternating passage on adaptation of sindbis virus to vertebrate and invertebrate cells. Journal of Virology 79:14253-14260.

Greisemer, R. A. 1976. Naturally occurring neoplastic diseases. Ix. Non human primates, Pages 309-323 Handbook of laboratory animal science. Cleveland, CRC Press.

Grenfell, B. T., O. G. Pybus, J. R. Gog, J. L. N. Wood, J. M. Daly, J. A. Mumford, and E. C. Holmes. 2004. Unifying the epidemiological and evolutionary dynamics of pathogens. Science 303:327-332.

Groves, C. P. 2001, Primate taxonomy. Washington, D.C., Smithsonian Press.

Gu, S., A. J. Pakstis, H. Li, W. C. Speed, J. R. Kidd, and K. K. Kidd. 2007. Significant variation in haplotype block structure but conservation in tagsnp patterns among global populations. European Journal of Human Genetics 15:302-312.

Guarente, L. 2000. Sir2 links chromatin silencing, metabolism, and aging. Genes and Development 14:1021-1026.

Guégan, J. F., F. Thomas, T. de Meeüs, M. Hochberg, and F. Renaud. 2001. Disease diversity and human fertility. Evolution 55:1308-1314.

Guernier, V., M. Hochberg, and J. F. Guégan. 2004. Ecology drives the worldwide distribution of human diseases. PLoS Biology 2:e186.

Guo, S. W., and D. R. Reed. 2001. The genetics of phenylthiocarbamide perception. Annals of Human Biology 28:111-142.

Gustafsson, L., and T. Part. 1990. Acceleration of senescence in the collared flycatcher ficedula albicollis by reproductive costs. Nature 347:279-281.

Guttman, D. S., and D. E. Dykhuizen. 1994. Detecting selective sweeps in naturally occurring escherichia coli. Genetics 138:993-1003.

Habicht, J. P., C. Yarbrough, A. Lechtig, and R. E. Klein. 1973. Relationship of birthweight, maternal nutrition and infant mortality. Nutrition Reports International 7:533-546.

Haggarty, P. 2002. Placental regulation of fatty acid delivery and its effects on fetal growth—a review. Placenta 23:S28-S38.

Haggett, P. 1994. Geographical aspects of the emergence of infectious diseases. Geografiska Annaler, Series B, Human Geography 76:91-104.

Hahn, B. H., G. M. Shaw, K. M. De Cock, and P. M. Sharp. 2000. Aids as a zoonosis: Scientific and public health implications. Science 287:607-614.

Hahn, T., S. Barth, R. Graf, M. Engelmann, D. Beslagic, J. M. H. M. Reul, F. Holsboer et al. 1999. Placental glucose transporter expression is regulated by glucocorticoids. Journal of Clinical Endocrinology and Metabolism 84:1445-1452.

Haig, D. 1987. Kin conflict in seed plants. Trends in Ecology and Evolution 2:337-340.

—. 1990. Brood reduction and optimal parental investment when offspring differ in quality. The American Naturalist 136:550-556.

—. 1992. Intragenomic conflict and the evolution of eusociality. Journal of theoretical Biology 156:401-403.

—. 1993. Genetic conflicts in human pregnancy. Quarterly Review of Biology 68:495-532.

—. 1996. Altercation of generations: Genetic conflicts of pregnancy. American Journal of Reproductive Immunology 35:226-232.

—. 1996. Gestational drive and the green-bearded placenta Proceedings of the National Academy of Sciences USA 93:6547-6551.

—. 1996. Placental hormones, genomic imprinting, and maternal—fetal communication Journal of Evolutionary Biology 9:357-380.

—. 2004. Genomic imprinting and kinship: How good is the evidence? . Annual Review of Genetics 38:553-585.

—. 2006. Putting up resistance: Maternal-fetal conflict over the control of uteroplacental blood flow in W. Aird, ed. The endothelium: A comprehensive reference. Cambridge, Cambridge University Press.

Haig, D., and R. Wharton. 2003. Prader-willi syndrome and the evolution of human childhood. American Journal of Human Biology 15:320-329.

Haldane, J. B. S. 1932, The causes of evolution. London, Longmans Green & Co.

—. 1932. The time of action of genes, and its bearing on some evolutionary problems. The American Naturalist 66:5-24.

—. 1941, New paths in genetics. London, Allen & Unwin.

Hales, C. N., and D. J. Barker. 1992. Type 2 (non-insulin-dependent) diabetes mellitus: The thrifty phenotype hypothesis. Diabetologia 35:595-601.

Hallander, H. O., A. Advani, D. Donnelly, L. Gustafsson, and R. M. Carlsson. 2005. Shifts of bordetella pertussis variants in sweden from 1970 to 2003, during three periods marked by different vaccination programs. Journal of Clinical Microbiology 43:2856-2865.

Halldorsson, B. V., V. Bafna, R. A. Lippert, R. Schwartz, F. M. De La Vega, A. G. Clark, and S. Istrail. 2004. Optimal haplotype block-free selection of tagging snps for genome-wide association studies. Genome Research 14:1633-1640.

Hamilton, J. B., and G. E. Mestler. 1969. Mortality and survival: Comparison of eunuchs with intact men and women in a mentally retarded population. Journal of Gerontology 24:395-411.

—. 1969. Mortality and survival: Comparison of eunuchs with intact men in a mentally retarded population. Journal of Gerontology 24:395-411.

Hamilton, W. D. 1964. The genetical evolution of social behavior, i & ii. Journal of Theoretical Biology 7:1-52.

Hamona, S. C., L. R. Kardia, E. Boerwinkle, K. Liu, K. L. E. Klosc, A. G. Clark, and C. F. Sing. 2006. Evidence for consistent intragenic and intergenic interactions between snp effects in the apoa1/c3/a4/a5 gene cluster. Human Heredity 61:87-96.

Han, Y., S. Gu, H. Oota, M. V. Osier, A. J. Pakstis, W. C. Speed, J. R. Kidd et al. 2007. Evidence of positive selection on a class i adh locus. American Journal of Human Genetics 80:441-456.

Hancock, B. W., E. S. Newlands, and R. S. Berkowitz. 1997. Gestational trophoblastic disease. London, Chapman & Hall Medical Publishers.

Hansen, J. L., J. A. Ippolito, N. Ban, P. Nissen, P. B. Moore, and T. A. Steitz. 2002. The structures of four macrolide antibiotics bound to the large ribosomal subunit. Molecular Cell 10:117-128.

Hansen-Wester, I., and M. Hensel. 2001. Salmonella pathogenicity islands encoding type iii secretion systems. Microbes and Infection 3:549-559.

Harada, S., D. P. Agarwal, and H. W. Goedde. 1981. Aldehyde dehydrogenase deficiency as cause of facial flushing reaction to alcohol in japanese. The Lancet 2:982.

Hardwick, T. H., P. Cassiday, R. S. Weyant, K. M. Bisgard, and G. N. Sanden. 2007. Changes in predominance and diversity of genomic subtypes of bordetella pertussis isolated in the united states, 1935 to 1999. Emerging Infectious Diseases 8:44-49.

Harman, S. M., E. J. Metter, J. D. Tobin, J. Pearson, and M. R. Blackman. 2001. Longitudinal effects of aging on serum total and free testosterone levels in healthy men. Baltimore longitudinal study of aging. Journal of Clinical Endocrinology and Metabolism 86:724-731.

Harrenstien, L. A., L. Munson, U. S. Seal, and American Zoo and Aquarium Association Mammary Cancer Study Group. 1996. Mammary cancer in captive wide felids and risk factors for its development: A retrospective study of the clinical behaviour of 31 cases. Journal of Zoo Wildlife Medicine 27:468-476.

Hartl, D. L., and A. G. Clark. 2007, Principles of population genetics. Sunderland, MA, Sinauer Associates, Inc.

Hartman, G., and R. Wise. 1998. Quorum sensing: Potential means of treating gram-negative infections? Lancet 351:848-849.

Hattersley, A. T., and J. E. Tooke. 1999. The fetal insulin hypothesis: An alternative explanation of the association of low birthweight with diabetes and vascular disease. The Lancet 353 1789-1792.

Hatwell, J. N., and P. M. Sharp. 2000. Evolution of human polyomavirus jc. Journal of General Virology 81:1191-1200.

Havlicek, J., Z. Gasova, A. P. Smith, K. Zvara, and J. Flegr. 2001. Decrease of psychomotor performance in subjects with latent 'asymptomatic' toxoplasmosis Parasitology 122:515-520.

Hawkes, K. 2004. Human longevity: The grandmother effect. Nature 428:128-129.

Hawkes, K., J. F. O'Connell, N. G. Blurton Jones, H. Alvarez, and E. L. Charnov. 1998. Grandmothering, menopause and the evolution of human life histories. Proceedings of the National Academy of Sciences USA 95:1336-1339.

Hawkes, K., and R. R. Paine. 2006, The evolution of human life history. Santa Fe, School of American Research Press.

Hediger, M. L., M. D. Overpeck, R. J. Kuczmarski, A. McGlynn, K. R. Maurer, and W. W. Davis. 1998. Muscularity and fatness of infants and young children born small- or large-for-gestational-age. Pediatrics 102:e60.

Hedrick, P. W. 2002. Pathogen resistance and genetic variation at mhc loci. Evolution 56:1902-1908.

Hedrick, P. W., and F. L. Black. 1997. Hla and mate selection: No evidence in south amerindians. American Journal of Human Genetics 61:505-511.

Hedrick, P. W., and G. Thomson. 1983. Evidence for balancing selection at hla. Genetics 104:449-456.

—. 1988. Maternal-fetal interactions and the maintenance of hla polymorphism. Genetics 119.

Heidelberg, J. F., J. A. Eisen, W. C. Nelson, R. A. Clayton, M. L. Gwinn, R. J. Dodson, D. H. Haft et al. 2000. DNA sequence of both chromosomes of the cholera pathogen vibrio cholerae. Nature 406:477-483.

Heini, A., G. Minghelli, E. Diaz, A. M. Prentice, and Y. Schutz. 1996. Free-living energy expenditure assessed by two different methods in rural gambian men. European Journal of Clinical Nutrition 50:284-289.

Heini, A., Y. Schutz, E. Diaz, A. M. Prentice, R. G. Whitehead, and E. Jecquier. 1991. Free living energy expenditure measured by two independent techniques in pregnant and non-pregnant gambian women. American Journal of Physiology 261:E9-E17.

Helgason, A., S. Pálsson, G. Thorleifsson, S. F. A. Grant, V. Emilsson, S. Gunnarsdottir, A. Adeyemo et al. 2007. Refining the impact of tcf7l2 gene variants on type 2 diabetes and adaptive evolution. Nature Genetics 39:218-225.

Henderson, I. R., P. Owen, and J. P. Nataro. 1999. Molecular switches – the on and off of bacterial phase variation. Molecular Microbiology 33:919-932.

Henkin, R. I., and W. T. Gillis. 1977. Divergent taste responsiveness to fruit of the tree antidesma bunius. Nature 265:536-537.

Hentzer, M., L. Eberl, J. Nielsen, and M. Givskov. 2003. Quorum sensing: A novel target for the treatment of biofilm infections. BioDrugs 17:241-250.

Herbert, A., N. P. Gerry, M. B. McQueen, I. M. Heid, A. Pfeufer, T. Illig, H.-E. Wichmann et al. 2006. A common genetic variant is associated with adult and childhood obesity. Science 312:279-283.

Herman-Giddens, M. E., J. B. Smith, M. Mittal, M. Carlson, and J. D. Butts. 2003. Newborns killed or left to die by a parent. A population-based study. The Journal of the American Medical Association289.

Herre, E. A. 1993. Population structure and the evolution of virulence in nematode parasites of fig wasps. Science 259:1442-1445.

Herskind, A. M., M. McGue, N. V. Holm, T. I. A. Sørensen, B. Harvald, and J. W. Vaupel. 1996. The heritability of human longevity: A population-based study of 2872 danish twin pairs born 1870-1900. Human Genetics 97:319-323.

Heymann, D. L., M. Szczeniowski, and K. Esteve. 1998. Re-emergence of monkeypox in africa: A review of the past six years. British Medical Bulletin 54:693-702.

Higgins, L. G. 1954. Prolonged pregnancy (partus serotinus). The Lancet 267:1154-1156.

Hill, A. V. S., C. E. M. Allsopp, D. Kwiatkowski, N. M. Anstey, P. Twumasi, P. A. Rowe, S. Bennett et al. 1991. Common west african hla antigens are associated with protection from severe malaria. Nature 352:595-600.

Hill, K., C. Boesch, J. Goodall, A. Pusey, J. Williams, and R. Wrangham. 2001. Mortality rates among wild chimpanzees. Journal of Human Evolution 40:437-450.

Hill, K., and A. M. Hurtado. 1991. The evolution of reproductive senescence and menopause in human females. Human Nature 2:315-350.

Hill, K., and H. Kaplan. 1999. Life history traits in humans: Theory and empirical studies. Annual Review of Anthropology 28:397-430.

Hill, K. R., K. Hawkes, M. Hurtado, and H. Kaplan. 1984. Seasonal variance in the diet of ache hunter-gatherers in eastern paraguay. Human Ecology 12:101-135.

Hill, K. R., and A. M. Hurtado. 1996, Ache life history: The ecology and demography of a foraging people. New York, Aldine de Gruyter.

Hill, W. G., and B. S. Weir. 1994. Maximum likelihood estimation of gene location by linkage disequilibrium. American Journal of Human Genetics 54:705-714.

Hinds, D. A., A. B. Seymour, L. K. Durham, P. Banerjee, D. G. Ballinger, P. M. Milos, D. R. Cox et al. 2004. Application of pooled genotyping to scan candidate regions for association with hdl cholesterol levels. Human Genomics 1:421-434.

Hinds, D. A., L. L. Stuve, G. B. Nilsen, E. Halperin, E. Eskin, D. G. Ballinger, K. A. Frazer et al. 2005. Whole-genome patterns of common DNA variation in three human populations. Science 307.

Hinrichs, A. L., J. C. Wang, B. B., J. M. Kwon, J. Budde, R. Allen, S. Bertelsen et al. 2006. Functional variant in a bitter-taste receptor (htas2r16) influences risk of alcohol dependence. American Journal of Human Genetics 78:103-111.

Hirsch, V. M., R. A. Olmsted, M. Murphey-Corb, R. H. Purcell, and P. R. Johnson. 1989. An african primate lentivirus (sivsm) closely related to hiv-2. Nature 339:389-392.

Hjelmborg, J. V., I. Iachine, A. Skytthe, J. W. Vaupel, M. McGue, M. Koskenvuo, J. Kaprio et al. 2006. Genetic influence on human lifespan and longevity. Human Genetics 119:312-321.

Hobcraft, C. J., J. W. MacDonald, and S. Rutstein. 1983. Child-spacing effects on infant and early child mortality. Population Index 49:585-618.

Hoe, N. P., K. Nakashima, S. Lukomski, D. Grigsby, M. Liu, P. Kordari, S.-J. Dou et al. 1999. Rapid selection of complement-inhibiting protein variants in group a streptococcus epidemic waves. Nature Medicine 5:924-929.

Holden, C. J., R. Sear, and R. Mace. 2003. Matriliny as daughter-biased investment. Evolution and Human Behavior 24:99-112.

Hollox, E. J., M. Poulter, M. Zvarik, V. Ferak, A. Krause, T. Jenkins, N. Saha et al. 2001. Lactase haplotype diversity in the old world. American Journal of Human Genetics 68:160-172.

Holman, D. J., and J. Wood. 2001. Pregnancy loss and fecundability in women, Pages 15-38 in P. T. Ellison, ed. Reproductive ecology and human evolution. New York, Aldine de Gruyter.

Holmes, E. C., P. L. Bollyky, S. Nee, A. Rambaut, G. P. Garnett, and P. H. Harvey. 1996. Using phylogenetic trees to reconstruct the history of infectious disease epidemics, Pages 169-186 in P. H. Harvey, A. J. Leigh Brown, J. Maynard Smith, and S. Nee, eds. New uses for new phylogenies. Oxford, Oxford University Press.

Holmes, E. C., and A. Rambaut. 2004. Virus evolution and the emergence of sars coronavirus. Philosophical Transactions of the Royal Society of London B 359:1059-1065.

Holmstad, P. R., K. H. Jensen, and A. Skorping. 2006. Vector-borne parasites decrease host mobility: A field test of freeze or flee behaviour of willow ptarmigan. International Journal for Parasitology in press.

Holt, R. D. 1985. Population dynamics in two-patch environments: Some anomalous consequences of an optimal habitat distribution. Theoretical Population Biology 28:181-208.

Holzenberger, M., J. Dupont, B. Ducos, P. Leneuve, A. Geloen, P. C. Even, P. Cervera et al. 2003. Igf-1 receptor regulates lifespan and resistance to oxidative stress in mice. Nature 421:182-187.

Homko, C. J., E. Sivan, E. A. Reece, and G. Boden. 1999. Fuel metabolism during pregnancy. Seminars in Reproductive Endocrinology 17:119-125.

Hood, D. W., M. E. Deadman, M. P. Jennings, M. Bisercic, R. D. Fleischmann, J. C. Venter, and E. R. Moxon. 1996. DNA repeats identify novel virulence genes in haemophilus influenzae. Proceedings of the National Academy of Sciences USA 93:11121-11125.

Horikawa, Y., N. Oda, N. J. Cox, X. Li, M. Orho-Melander, M. Hara, Y. Hinokio et al. 2000. Genetic variation in the gene encoding calpain-10 is associated with type 2 diabetes mellitus. Nature Genetics 26:163-175.

Howitz, K. T., K. J. Bitterman, H. Y. Cohen, D. W. Lamming, S. Lavu, J. G. Wood, R. E. Zipkin et al. 2003. Small molecule activators of sirtuins extend saccharomyces cerevisiae lifespan. Nature 425:191-196.

Hrdy, S. B. 1999, Mother nature: A history of mothers, infants and natural selection. New York, Pantheon Books.

—. 2005. Comes the child before man. How cooperative breeding and prolonged postweaning dependence shaped human potential, Pages 65-91 in B. S. Hewlett, and M. E. Lamb, eds. Hunter-gatherer childhoods. New Brunswick, Aldine Transaction.

Hsu, H.-Y., M.-H. Chang, Y.-H. Ni, and H. L. Chen. 2004. Survey of hepatitis b surface variant infection in children 15 years after a nationwide vaccination programme in taiwan. Gut 53:1499-1503.

Hsu, K. K., and S. I. Pelton. 2003. Heptavalent pneumococcal conjugate vaccine: Current and future impact. Expert Review of Vaccines 2:619-631.

Huang, S. S., R. Platt, S. L. Rifas-Shiman, S. I. Pelton, D. Goldmann, and J. A. Finkelstein. 2005. Post-pcv7 changes in colonizing pneumococcal serotypes in 16 massachusetts communities, 2001 and 2004. Pediatrics 116:E408-E413.

Hughes, A. L. 2002. Origin and evolution of viral interleukin-10 and other DNA virus genes with vertebrate homologues. Journal of Molecular Evolution 54:90-101.

Hughes, A. L., and M. Yeager. 1998. Natural selection at major histocompatibility complex loci of vertebrates. Annual Review Of Genetics 32:415-435.

Human Mortality Database. 2006. Http://www.Mortality.Org/.

Humphrey, N. K. 1976. The social function of intellect, Pages 303-318 in P. P. G. Bateson, and R. A. Hinde, eds. Growing points in ethology Cambridge, Cambridge University Press.

Hunt, J. S., M. G. Petroff, R. H. McIntire, and C. Ober. 2005. Hla-g and immune tolerance in pregnancy. FASEB Journal 19:681-693.

Hurley, K. F., P. A. Pesavento, N. C. Pedersen, A. M. Poland, E. Wilson, and J. E. Foley. 2004. An outbreak of virulent systemic feline calicivirus disease. Journal of the American Veterinary Medical Association 224:241-249.

Hurtado, M., and K. R. Hill. 1990. Seasonality in a foraging society: Variation in diet, work effort, fertility and sexual division of labour among the hiwi of venezuela. Journal of Anthropological Research 46:293-346.

Huxsoll, C. C., E. O. Price, and T. E. Adams. 1998. Testis function, carcass traits, and aggressive behavior of beef bulls actively immunized against gonadotropin-releasing hormone. Journal of Animal Science 76:1760-1766.

Hviid, T. V. F. 2006. Hla-g in human reproduction: Aspects of genetics, function and pregnancy complications. Human Reproduction Update 12:209-232.

Hviid, T. V. F., S. Hylenius, A. Lindhard, and O. B. Christiansen. 2004. Association between human leukocyte antigen-g genotype and success of in vitro fertilization and pregnancy outcome. Tissue Antigens 64:66-69.

Ibáñez, L., K. Ong, D. B. Dunger, and F. de Zegher. 2006. Early development of adiposity and insulin resistance following catch-up weight gain in small-for-gestational-age children. Journal of Clinical Endocrinology and Metabolism 91:2153-2158.

Ichimori, K., C. F. Curtis, and G. A. T. Targett. 1990. The effects of chloroquine on the infectivity of chloroquine-sensitive and -resistant populations of plasmodium yoelii nigeriensis to mosquitoes. Parasitology 100:377-381.

Ilver, D., A. Arnqvist, J. Ogren, I.-M. Frick, D. Kersulyte, E. T. Incecik, D. E. Berg et al. 1998. Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging. Science 279:373-377.

Imai, S., C. M. Armstrong, M. Kaeberlein, and L. Guarente. 2000. Transcriptional silencing and longevity protein sir2 is an nad- dependent histone deacetylase. Nature 403:795-800.

Imhoof, B., and P. Schmid-Hempel. 1998. Single-clone and mixed-clone infections versus host environment in crithidia bombi infecting bumblebees. Parasitology 117:331-336.

Ingelman-Sundberg, M. 2004. Pharmacogenetics of cytochrome p450 and its applications in drug therapy: The past, present and future. Trends in Pharmacological Sciences 25:193-200.

Ingemarsson, I. 2003. Gender aspects of preterm birth. BJOG : An International Journal of Obstetrics and Gynaecology 110 Suppl 20:34-38.

Ingram, D. K., G. S. Roth, M. A. Lane, M. A. Ottinger, S. Zou, R. de Cabo, and J. A. Mattison. 2006. The potential for dietary restriction to increase longevity in humans: Extrapolation from monkey studies. Biogerontology 7:143-148.

Institute of Medicine. 2003, Microbial threats to health: Emergence, detection, and response. Washington, National Academy Press.

Institute of Medicine of the National Academies. 2002, Dietary reference intakes: Energy, carbohydrate, fiber, fat, fatty acids, cholesterol, protein, and amino acids. Washington DC, National Academies Press.

International HapMap Consortium. 2005. A haplotype map of the human genome. Nature 437:1299-1320.

Irons, W. 1979. Cultural success and biological success, Pages 257-272 in N. A. Chagnon, and W. Irons, eds. Evolutionary biology and human social behavior North Scituate, Duxbury Press.

—. 1998. Adaptively relevant environments versus the environment of evolutionary adaptedness. Evolutionary Anthropology 6:194-204.

Ishitani, A., N. Sageshima, N. Lee, N. Dorofeeva, K. Hatake, H. Marquardt, and D. E. Geraghty. 2003. Protein expression and peptide binding suggest unique and interacting functional roles for hla-e, f, and g in maternal-placental immune recognition. Journal of Immunology 171:1376-1384.

Islam, A., B. F. Cheetham, T. J. Mahony, P. L. Young, and S. W. Walkden-Brown. 2006. Absolute quantitation of marek's disease virus and herpesvirus of turkeys in chicken lymphocyte, feather tip and dust samples using real-time pcr. Journal of Virological Methods 132:127-134.

Ito, Y., T. Azuma, S. Ito, H. Miyaji, M. Hirai, Y. Yamazaki, F. Sato et al. 1997. Analysis and typing of the vaca gene from caga-positive strains of helicobacter pylori isolated in japan. Journal of Clinical Microbiology 35:1710-1714.

Jackson, A. L., and L. A. Loeb. 1998. The mutation rate and cancer. Genetics 148:1483-1490.

Jacob, S., M. K. McClintock, B. Zelano, and C. Ober. 2002. Paternally inherited hla alleles are associated with women's choice of male odor. Nature Genetics 30:175-179.

Jaffe, H. W., J. M. McCurdy, M. L. Kalish, T. Liberti, G. Metellus, B. H. Bowman, S. B. Richards et al. 1994. Lack of hiv transmission in the practice of a dentist with aids. Annals of Internal Medicine 121:855-859.

Jallepalli, P. V., and C. Lengauer. 2001. Chromosome segregation and cancer: Cutting through the mystery. Nature Reviews Cancer 1:109-117.

James, R., C. Kleanthous, and G. R. Moore. 1996. The biology of e colicins: Paradigms and paradoxes. Microbiology 142 ( Pt 7):1569-1580.

James, W. P. T., and E. C. Schofield. 1990, Human energy requirements: A manual for planners and nutritionists. Oxford, Oxford University Press.

Janzen, V., R. Forkert, H. E. Fleming, Y. Saito, M. T. Waring, D. M. Dombkowski, T. Cheng et al. 2006. Stem-cell ageing modified by the cyclin-dependent kinase inhibitor p16ink4a. Nature 443:421-426.

Jasienka, G., I. Thune, and P. T. Ellison. 2000. Energetic factors, ovarian steroids and the risk of breast cancer. European Journal of Cancer Prevention 9:231-239.

Jasienska, G., I. Nenko, and M. Jasienski. 2006. Daughters increase longevity of fathers, but daughters and sons equally reduce longevity of mothers. American Journal of Human Biology 18:422-425.

Jasienska, G., and I. Thune. 2001. Lifestyle, hormones, and risk of breast cancer. British Medical Journal 322:586-587.

Jasienska, G., I. Thune, and P. T. Ellison. 2006. Fatness at birth predicts adult susceptibility to ovarian suppression: An empirical test of the predictive adaptive response hypothesis. Proceedings of the National Academy of Sciences USA 103:12759-12762.

Jeffreys, A. J., L. Kauppi, and R. Neumann. 2001. Intensely punctate meiotic recombination in the class ii region of the major histocompatibility complex. Nature Genetics 29:217-222.

Jenike, M. R. 2001. Nutritional ecology: Diet, physical activity and body size in C. Panter-Brick, R. H. Layton, and P. Rowley-Conwy, eds. Hunter-gatherers: An interdisciplinary perspective Cambridge, Cambridge University Press.

Jenkins, G. M., A. Rambaut, O. G. Pybus, and E. C. Holmes. 2002. Rates of molecular evolution in rna viruses: A quantitative phylogenetic analysis. Journal of Molecular Evolution 54:156-165.

Jenkins, N. L., G. McColl, and G. J. Lithgow. 2004. Fitness cost of extended lifespan in caenorhabditis elegans. Proceedings of the Royal Society B 271:2523-2526.

Jensen, K. H., T. Little, A. Skorping, and D. Ebert. 2006. Empirical support for optimal virulence in a castrating parasite. Plos Biology 4:1265-1269.

Jeon, K. W. 1972. Development of cellular dependence on infective organisms: Micrurgical studies in amoebas. Science 176:1122-1123.

Jimenez-Chillaron, J. C., M. Hernandez-Valencia, A. Lightner, R. R. Faucette, C. Reamer, R. Przybyla, S. Ruest et al. 2006. Reductions in caloric intake and early postnatal growth prevent glucose intolerance and obesity associated with low birthweight. Diabetologia 49 1974-1984.

Jin, C., Y. Jin, J. Wennerberg, J. Åkervall, B. Grenthe, N. Mandahl, S. Heim et al. 1997. Clonal chromosome aberrations accumulate with age in upper aerodigestive tract mucosa. Mutation Research 374:63-72.

Jobling, M. A., M. E. Hurles, and C. Tyler-Smith. 2004, Human evolutionary genetics. New York, Garland Science.

Johnson, C. C., and A. R. Tunkel. 2005. Viridans streptococci, groups c and g streptococci, and gemella morbillorum, Pages 2434-2451 in G. L. Mandell, J. E. Bennett, and R. Dolin, eds. Mandell, douglas, and bennett's principles and practice of infectious diseases. Philadelphia, Elsevier Churchill Livingstone.

Johnson, D. R., and E. L. Kaplan. 1993. A review of the correlation of t-agglutination patterns and m-protein typing and opacity factor production in the identification of group a streptococci. Journal Medical Microbiology 38:311-315.

Johnson, D. R., D. L. Stevens, and E. L. Kaplan. 1992. Epidemiologic analysis of group a streptococcal serotypes associated with severe systemic infections, rheumatic fever, or uncomplicated pharyngitis. Journal of Infectious Diseases 166:374-382. .

Johnson, G. C., L. Esposito, B. J. Barratt, A. N. Smith, J. Heward, G. Di Genova, H. Ueda et al. 2001. Haplotype tagging for the identification of common disease genes 29:233-237.

Johnson, J., J. Canning, T. Kaneko, J. K. Pru, and J. L. Tilly. 2004. Germline stem cells and follicular renewal in the postnatal mammalian ovary. Nature 428:145-150.

Johnson, J. R., M. A. Kuskowski, K. Owens, A. Gajewski, and P. L. Winokur. 2003. Phylogenetic origin and virulence genotype in relation to resistance to fluoroquinolones and/or extended-spectrum cephalosporins and cephamycins among escherichia coli isolates from animals and humans. Journal of Infectious Diseases 188:759-768.

Johnson, T. E., and W. B. Wood. 1982. Genetic analysis of life-span in caenorhabditis elegans. Proceedings of the National Academy of Sciences ISA 79:6603-6607.

Johnson, T. J., Y. M. Wannemeuhler, J. A. Scaccianoce, S. J. Johnson, and L. K. Nolan. 2006. Complete DNA sequence, comparative genomics, and prevalence of an inchi2 plasmid occurring among extraintestinal pathogenic escherichia coli isolates. Antimicrobial Agents and Chemotherapy 50:3929-3933.

Johnston, F. E., S. Cohen, and A. Beller. 1985. Body composition and temperature regulation in newborns. Journal of Human Evolution 14:341-345.

Johnston, F. E., W. S. Laughlin, A. B. Harper, and A. E. Ensroth. 1982. Physical growth of st. Lawrence island eskimos: Body size, proportion, and composition American Journal of Physical Anthropology 58:397-301.

Jonason, A. S., S. Kunala, G. J. Price, R. J. Restifo, H. M. Spinelli, J. A. Persing, D. J. Leffell et al. 1996. Frequent clones of p53-mutated keratinocytes in normal human skin. Proceedings of the National Academy of Sciences USA 93:14025-14029.

Jones, T. R. 1997. Quantitative aspects of the relationship between the sickle-cell gene and malaria. Parasitology Today 13:107-111.

Jorde, L. B. 1995. Invited editorial: Linkage disequilibrium as a gene mapping tool. American Journal of Human Genetics 56:11-14.

—. 2000. Linkage disequilibrium and the search for complex disease genes. Genome Research 10:1435-1444.

Jorde, L. B., J. C. Carey, M. L. Bamshad, and R. L. White. 2006, Medical genetics. St. Louis, Mosby.

Jorde, L. B., A. R. Rogers, M. L. Bamshad, W. S. Watkins, P. Krakowiak, S. Sung, J. Kere et al. 1997. Microsatellite diversity and the demographic history of modern humans. Proceedings of the Natural Academy of Sciences USA 94:3100-3103.

Jung, A., R. Maier, J. P. Vartanian, G. Bocharov, V. Jung, U. Fischer, E. Meese et al. 2002. Multiply infected spleen cells in hiv patients. Nature 418:144.

Kaeberlein, M., M. McVey, and L. Guarente. 1999. The sir2/3/4 complex and sir2 alone promote longevity in sacch