61. Preprint Persistence-infectivity trade-offs in environmentally transmitted pathogens change population-level disease dynamics arXiv
Brouwer AF, Eisenberg MC, Love NG, and Eisenberg JNS.
In Revision.
60. Preprint Changing Burial Practices Explain Temporal Trends in the 2014 Ebola Outbreak arXiv
Hayashi MAL and Eisenberg MC.
In Revision.
59. Preprint Forecasting and Uncertainty in Modeling the 2014-2015 Ebola Epidemic in West Africa arXiv
Eisenberg MC, Eisenberg JNS, D'Silva JP, Wells EV, Cherng S, Kao YH, Meza R.
In Revision.
58. In Press Multisite HPV infections in the United States (NHANES 2003–2014): An overview and synthesis
Brouwer AF, Eisenberg MC, Carey TE, Meza R.
Preventative Medicine, in press.
57. In Press A mechanistic modeling approach to understanding joint cohort patterns of HPV cervicogenital and seroprevalence in unvaccinated women in the U.S. GitHub
Brouwer AF, Meza R, Eisenberg MC.
Philosophical Transactions B, in press.
55. New Introducing BAIT (Biofilm Architecture Inference Tool): A Software Program to Evaluate the Architecture of Oral Multi-Species Biofilms. GitHub
Luo TL, Hayashi MAL, Zsiska M, Circello B, Eisenberg MC, Gonzalez-Cabezas C, Foxman B, Marrs CF, Rickard AH
Microbiology 10.1099/mic.0.000761.


54. New Epidemiology of the silent polio outbreak in Rahat, Israel based on modeling of environmental surveillance data
Brouwer AF, Eisenberg JNS, Pomeroy CD, Shulman LM, Hindiyeh M, Manor Y, Grotto I, Koopman JS, and Eisenberg MC.
Proceedings of the National Academy of Sciences, In press.
Press release The Conversation Daily Beast Contagion
53. New Fomite-mediated transmission as a sufficient pathway: a comparative analysis across three viral pathogens
Kraay ANM, Hayashi MAL, Hernandez-Ceron N, Spicknall IH, Eisenberg MC, Meza R, and Eisenberg JNS.
BMC Infectious Diseases 18:540.
52. Dynamics and Determinants of HPV Infection: The Michigan HPV and Oropharyngeal Cancer (M-HOC) Study
Eisenberg MC*, Campredon LP, Brouwer AF, Walline, HM, Marinelli BM, Lau YK, Thomas TB, Sullivan TS, Yost ML, Goudsmit CM, Carey TE, Meza R*. (*equal co-authorship)
BMJ Open, 8:e021618.
51. Identification of the fraction of indolent tumors and associated overdiagnosis in breast cancer screening trials
Ryser MD, Gulati R, Eisenberg MC, Shen Y, Hwang ES, Etzioni R.
American Journal of Epidemiology, 188(1): 197-205.
50. DNA Concentration from self samples for HPV testing (letter/commentary)
Meza R, Lau YK, Thomas TB, Carey TE, Walline HMM, and Eisenberg MC.
International Journal of Cancer, 143(11): 3036-3037.
48. A Sensitive Thresholding Method for Confocal Laser Scanning Microscope Image Stacks of Microbial Biofilms
Luo TL, Eisenberg MC, Hayashi M, Gonzalez-Cabezas C, Foxman B, Marrs CF, Rickard AH.
Scientific Reports 8: 13013.
47. Analytical and Computational Study of an Individual-Based Network Model for the Spread of Heavy Drinking
French DA, Eisenberg MC, Nance T, and Teymuroglu Z.
Journal of biological dynamics, 12(1): 509-526.
46. Connecting etiological agent prevalence to cancer incidence: Case studies of gastric, lung, and oral cancer
Brouwer AF, Eisenberg MC, Meza R.
Cancer Research, 78(12): 3386-3396.
45. Measuring bi-directional bacterial transfer efficiencies: impact on model parameterization
Greene C, Hernandez Ceron N, Eisenberg MC, Koopman J, Xi C, and Eisenberg JNS.
American Journal of Infection Control, 46(6): 620-626.
44. Clostridium difficile shows no trade-off between toxin and spore production within the human host
Blanco N, Walk S, Malani AN, Rickard A, Benn M, Eisenberg MC, Zhang M, Foxman B.
Journal of Medical Microbiology, 67(5): 631-640.


43. Application of an Individual-Based Transmission Hazard Model for Estimation of Influenza Vaccine Effectiveness in a Household Cohort
Petrie JG, Eisenberg MC, Ng S, Malosh RE, Lee KH, Ohmit SE, and Monto AS.
American Journal of Epidemiology, 186(12): 1380-1388.
42. An in silico evaluation of treatment regimens for recurrent Clostridium difficile infection
Blanco N, Foxman B, Malani AN, Xhang M, Walk S, Rickard A, and Eisenberg MC.
PLOS ONE, 12(8): e0182815.
41. Data and Identifiability in Models of Cancer Chemotherapy: a Confidence Building Exercise
Eisenberg MC* and Jain HV*. (*equal coauthorship)
Journal of Theoretical Biology, 431: 63-78.
40. Modeling spatial invasion of Ebola in West Africa arXiv GitHub
D'Silva JP and Eisenberg MC.
Journal of Theoretical Biology, 428:65-75.
39. Molecular DNA identification of blood sources fed on, for Culicine mosquitoes (Diptera: Culicidae) collected in the Songkhla province, southern Thailand
Pengsakul T, Sudsom N, Foakes G, Bhatt K, Eisenberg MC, Siriyasatien P.
Songklanakarin Journal of Science and Technology, 39 (6): 1-7.
38. Dynamics Affecting the Risk of Silent Circulation When Oral Polio Vaccination Is Stopped BioRχiv
Koopman JS, Henry CJ, Park JH, Eisenberg MC, Ionides EL, Eisenberg JNS.
Epidemics, 20C: 21-36.
37. Dose-response Relationships for Environmentally Mediated Infectious Disease Transmission Models
Brouwer AF,Weir MH, Eisenberg MC, Meza R, and Eisenberg JNS.
PLOS Computational Biology, 13(4): e1005481.
36. Parameter estimation for multistage clonal expansion models from cancer incidence data: a practical identifiability analysis.
Brouwer AF, Meza R, and Eisenberg MC.
PLOS Computational Biology, 13(3): e1005431.
35. Modeling biphasic environmental decay of pathogens and implications for risk analysis
Brouwer AF, Eisenberg MC, Remais JV, Collender PA, Meza R, Eisenberg JNS.
Environmental Science and Technology, 51 (4), 2186–2196.
34. Model distinguishability and inference robustness in mechanisms of cholera transmission and loss of immunity arXiv GitHub
Lee EC, Kelly MR, Ochocki BM, Akinwumi SM, Hamre KE, Tien JH, and Eisenberg MC.
J. Theoretical Biology, 420: 68–81.
33. “Ebola Kills Generations”: Qualitative interviews with Liberian healthcare providers
Bell SA, Munro-Kramer M, Eisenberg MC, Lori J.
Midwifery 45:44-49.


32. A systematic approach to determining the identifiability of multistage carcinogenesis models
Brouwer AF, Meza R, and Eisenberg MC.
Risk Analysis, doi:10.1111/risa.12684.
30. What transmission precautions best control influenza spread in a hospital?
Blanco N, Eisenberg MC, Stillwell T, Foxman B.
American Journal of Epidemiology, 183(11): 1045-1054.
29. THYROSIM App for Education and Research Predicts Potential Health Risks of Over-the-Counter (OTC) Thyroid Supplements
Han SX, Eisenberg MC, Larsen PR, DiStefano JJ.
Thyroid, 26(4): 489-498.
27. The impact of spatial arrangements on epidemic disease dynamics and intervention strategies
Kelly M, Tien J, Eisenberg MC, Lenhart S.
Journal of Biological Dynamics, 10(1): 222-249.
26. Design and Methods of a Social Network Isolation Study for Reducing Respiratory Infection Transmission: The eX-FLU Cluster Randomized Trial
Aiello AE, Simanek AM, Eisenberg MC, Walsh AR, Davis B, Volz E, Cheng C, Rainey JJ, Uzicanin A, Gao H, Osgood N, Knowles D, Stanley K, Tarter K, Monto AS.
Epidemics, 15:38-55.
25. Effects of Adaptive Protective Behavior on the Dynamics of Sexually Transmitted Infections arXiv
Hayashi MAL and Eisenberg MC.
J. Theoretical Biology, 388: 119-130.


23. Connecting Local and Global Sensitivities for a Mathematical Model in Wound Healing
Krishna N, Pennington H, Coppola C, Eisenberg MC, Schugart R.
Bulletin of Mathematical Biology, 77 (12): 2294-2324
22. Identifiability results for several classes of linear compartment models arXiv
Meshkat N, Sullivant S, Eisenberg MC.
Bulletin of Mathematical Biology, 77 (8): 1620-1651
21. Transmission heterogeneity and autoinoculation in a multisite infection model of HPV
Brouwer AF, Meza R, Eisenberg MC.
Mathematical Biosciences, 270 (A):115-125.
20. Hierarchical Graph-Coupled HMMs on Heterogeneity and Personalized Health
Fan K, Eisenberg MC, Walsh AR, Aiello A, Heller K.
KDD '15 Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 239-248.
19. Fomite-fingerpad transfer efficiency (pick-up and deposit) of Acinetobacter baumannii—with and without a latex glove PubMed
Greene C, Vadlamudi G, Eisenberg MC, Foxman B, Koopman J, Xi C.
American Journal of Infection Control, 43(9):928–934.
18. What factors might have led to the emergence of Ebola in West Africa? PubMed
Alexander KA, Sanderson CE, Marathe M, Lewis BL, Rivers CM, Shaman J, Drake JM, Lofgren E, Dato VM, Eisenberg MC, Eubank S.
PLOS Neglected Tropical Diseases, 9(6): e0003652.
17. Disease invasion on community networks with environmental pathogen movement PubMed
Tien JH, Shuai Z, Eisenberg MC, van den Driessche P.
Journal of Mathematical Biology, 70 (5): 1065-1092.


16. Opinion: Mathematical models: A key tool for outbreak response (letter/commentary) PubMed
Lofgren L, Halloran ME, Rivers CM, Drake JM, Porco TC, Lewis B, Yang W, Vespignani A, Shaman J, Eisenberg JNS, Eisenberg MC, Marathe M, Scarpino SV, Alexander KA, Meza R, Ferrari MJ, Hyman JM, Meyers LA, and Eubank S.
PNAS 2014 111 (51) 18095-18096.
15. Ebola: Mobility Data (letter/commentary) PubMed
Halloran EM, Vespignani A, Bharti N, Feldstein LR, Alexander K, Ferrari M, Shaman J, Drake JM, Porco T, Eisenberg J, DeValle S, Lofgren E, Scarpino SV, Eisenberg MC, Gao D, Hyman JM, Eubank S, Longini IM.
Science 346 (6208): 433.
14. Determining Identifiable Parameter Combinations Using Subset Profiling arXiv
Eisenberg MC, Hayashi MAL.
Mathematical Biosciences 256: 116–126.


13. Examining rainfall and cholera dynamics in Haiti using statistical and dynamic modeling approaches PubMed
Eisenberg MC, Kujbida G, Tuite AR, Fisman DN, Tien JH.
Epidemics 5(4): 197-207.
11. A Cholera Model in a Patchy Environment with Water and Human Movement PubMed
Eisenberg MC, Shuai Z, Tien JH, van den Driessche P.
Math Biosciences 246(1): 105-112.
10. Identifiability and estimation of multiple transmission pathways in cholera and waterborne disease PubMed
Eisenberg MC, Robertson SL, Tien JH.
J. Theor. Biol. 324: 84-102.



8. Mechanistic modeling of the effects of myoferlin on tumor cell invasion PubMed
Eisenberg MC, Kim Y, Li R, Ackerman WE, Kniss DA, Friedman A.
Proceedings of the National Academy of Sciences (PNAS) 108(50): 20078-20083.
7. In silico synchronization of cellular populations through expression data deconvolution arXiv
Eisenberg MC, Ash JN, Siegal-Gaskins D.
Proceedings of the ACM/IEEE Design Automation Conference (DAC) 2011.


5. TSH Regulation Dynamics In Central and Extreme Primary Hypothyroidism PubMed
Eisenberg MC, Santini F, Marsili A, Pinchera A, DiStefano JJ.
Thyroid 22(11): 1215-1228.




1. L-T4 Bioequivalence and Hormone Replacement Studies Via Feedback Control Simulations PubMed
Eisenberg MC, Samuels MH, DiStefano JJ.
Thyroid 16(12): 1279-1292.