Slides & Hands-on Activity for Identifiability
Tutorial Slides
Identifiability Practical
Instructions
Cholera data set
Example code for parameter estimation with the SIR model:
main code
,
cost function file
,
ODE function file
Additional useful code:
numerical Fisher information matrix code
,
pairwise plotting code
Solution code for the practical:
main code
,
cost function file
,
ODE function file
(Note this needs the additional code for the FIM and pairwise plots given above as well.)
Previous tutorial materials (2014)