Joshua A. Anderson, Ph.D.

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Publications

[24]
Wenbo Shen, James Antonaglia, Joshua A. Anderson, Michael Engel, Greg van Anders, and Sharon C. Glotzer. Symmetries in hard polygon systems determine plastic colloidal crystal mesophases in two dimensions. Soft Matter, 2019. (doi:10.1039/C9SM00016J)
[23]
Carl S. Adorf, Vyas Ramasubramani, Joshua A. Anderson, and Sharon C. Glotzer. How to professionally develop reusable scientific software — and when not to. Computing in Science & Engineering, pages 1–1, 2018. (doi:10.1109/MCSE.2018.2882355)
[22]
Joshua A. Anderson, James Antonaglia, Jaime A. Millan, Michael Engel, and Sharon C. Glotzer. Shape and symmetry determine two-dimensional melting transitions of hard regular polygons. Physical Review X, 7(2):021001, apr 2017. (doi:10.1103/PhysRevX.7.021001)
[21]
Matthew Spellings, Ryan L. Marson, Joshua A. Anderson, and Sharon C. Glotzer. GPU accelerated Discrete Element Method (DEM) molecular dynamics for conservative, faceted particle simulations. Journal of Computational Physics, 334:460–467, apr 2017. (doi:10.1016/j.jcp.2017.01.014)
[20]
Joshua A. Anderson, M. Eric Irrgang, and Sharon C. Glotzer. Scalable Metropolis Monte Carlo for simulation of hard shapes. Computer Physics Communications, 204:21–30, jul 2016. (doi:10.1016/j.cpc.2016.02.024)
[19]
Michael P. Howard, Joshua A. Anderson, Arash Nikoubashman, Sharon C. Glotzer, and Athanassios Z. Panagiotopoulos. Efficient neighbor list calculation for molecular simulation of colloidal systems using graphics processing units. Computer Physics Communications, 203:45–52, jun 2016. (doi:10.1016/j.cpc.2016.02.003)
[18]
Eric S. Harper, Ryan L. Marson, Joshua A. Anderson, Greg van Anders, and Sharon C. Glotzer. Shape allophiles improve entropic assembly. Soft Matter, 11(37):7250–7256, 2015. (doi:10.1039/C5SM01351H)
[17]
Jens Glaser, Trung Dac Nguyen, Joshua A. Anderson, Pak Lui, Filippo Spiga, Jaime A. Millan, David C. Morse, and Sharon C. Glotzer. Strong scaling of general-purpose molecular dynamics simulations on GPUs. Computer Physics Communications, 192:97–107, jul 2015. (doi:10.1016/j.cpc.2015.02.028)
[16]
Ryan L. Marson, Carolyn L. Phillips, Joshua A. Anderson, and Sharon C. Glotzer. Phase behavior and complex crystal structures of self-assembled tethered nanoparticle telechelics. Nano Letters, 14(4):2071–2078, apr 2014. (doi:10.1021/nl500236b)
[15]
Joshua A. Anderson, Eric Jankowski, Thomas L. Grubb, Michael Engel, and Sharon C. Glotzer. Massively parallel Monte Carlo for many-particle simulations on GPUs. Journal of Computational Physics, 254(1):27–38, jul 2013. (doi:10.1016/j.jcp.2013.07.023)
[14]
Michael Engel, Joshua A. Anderson, Sharon C. Glotzer, Masaharu Isobe, Etienne P. Bernard, and Werner Krauth. Hard-disk equation of state: First-order liquid-hexatic transition in two dimensions with three simulation methods. Physical Review E, 87(4):042134, apr 2013. (doi:10.1103/PhysRevE.87.042134)
[13]
Carolyn L. Phillips, Joshua A. Anderson, Greg Huber, and Sharon C. Glotzer. Optimal Filling of Shapes. Physical Review Letters, 108(19):1–5, may 2012. (doi:10.1103/PhysRevLett.108.198304)
[12]
Trung Dac Nguyen, Carolyn L. Phillips, Joshua A. Anderson, and Sharon C. Glotzer. Rigid body constraints realized in massively-parallel molecular dynamics on graphics processing units. Computer Physics Communications, 182(11):2307–2313, nov 2011. (doi:10.1016/j.cpc.2011.06.005)
[11]
Carolyn L. Phillips, Joshua A. Anderson, and Sharon C. Glotzer. Pseudo-random number generation for Brownian dynamics and dissipative particle dynamics simulations on GPU devices. Journal of Computational Physics, 230(19):7191–7201, aug 2011. (doi:10.1016/j.jcp.2011.05.021)
[10]
Sharon C. Glotzer and Joshua A. Anderson. Nanoparticle assembly: Made to order. Nature Materials, 9(11):885–887, nov 2010. (doi:10.1038/nmat2892)
[9]
Joshua A. Anderson, Rastko Sknepnek, and Alex Travesset. Design of polymer nanocomposites in solution by polymer functionalization. Physical Review E, 82(2):021803, aug 2010. (doi:10.1103/PhysRevE.82.021803)
[8]
Joshua A. Anderson. Phases of polymer systems in solution studied via molecular dynamics. PhD thesis, Iowa State University, 2009.
[7]
Michael Garland, Scott Le Grand, John Nickolls, Joshua A. Anderson, Jim Hardwick, Scott Morton, Everett Phillips, Yao Zhang, and Vasily Volkov. Parallel computing experiences with CUDA. Ieee Micro, 28(4):13–27, 2008.
[6]
Christian D. Lorenz, Paul S. Crozier, Joshua A. Anderson, and Alex Travesset. Molecular Dynamics of Ionic Transport and Electrokinetic Effects in Realistic Silica Channels. Journal of Physical Chemistry C, 112(27):10222–10232, jul 2008. (doi:10.1021/jp711510k)
[5]
Rastko Sknepnek, Joshua A. Anderson, Monica H. Lamm, Jörg Schmalian, and Alex Travesset. Nanoparticle ordering via functionalized block copolymers in solution.. ACS nano, 2(6):1259–65, jun 2008. (doi:10.1021/nn8001449)
[4]
Joshua A. Anderson, Christian D. Lorenz, and Alex Travesset. General purpose molecular dynamics simulations fully implemented on graphics processing units. Journal of Computational Physics, 227(10):5342–5359, may 2008. (doi:10.1016/j.jcp.2008.01.047)
[3]
Joshua A. Anderson, Christian D. Lorenz, and Alex Travesset. Micellar crystals in solution from molecular dynamics simulations.. The Journal of chemical physics, 128(18):184906, may 2008. (doi:10.1063/1.2913522)
[2]
Chris D. Knorowski, Joshua A. Anderson, and Alex Travesset. Self-assembled ordered polymer nanocomposites directed by attractive particles.. The Journal of chemical physics, 128(16):164903, apr 2008. (doi:10.1063/1.2907744)
[1]
Joshua A. Anderson and Alex Travesset. Coarse-Grained Simulations of Gels of Nonionic Multiblock Copolymers with Hydrophobic Groups. Macromolecules, 39(15):5143–5151, jul 2006. (doi:10.1021/ma061120f)