Softwares that I developed
rSeq - RNA-Seq Analyzer
SeqMap - A Tool For Mapping Millions Of Short Sequences To The Genome
CisGenome Browser - A Compact Stand-Alone Genome Browser
Glmnet for MATLAB - A matlab wrapper for glmnet, a solver for fitting Lasso (L1) and elastic-net regularized generalized linear models. Algorithm designed by Jerome Friedman, Trevor Hastie and Rob Tibshirani. Fortran code written by Jerome Friedman
Sofwares that I contributed
SeqAlto - Fast and Accurate Read Alignment for Resequencing
SpliceMap - Splice Junction Discovery Using RNA-Seq
mseq - An R package for modeling non-uniformity in short-read rates in RNA-Seq data
CisGenome
- An integrated tool for tiling array, genome and cis-regulatory
element analysis, working together with CisGenome Browser
GeneBASE - A tool for estimating gene-level expression from Affymetrix exon arrays