Welcome to Gábor Tóth's home page


Position: Research Professor

Address:  Center for Space Environment Modeling
          Dept. of Climate and Space
          University of Michigan
        
          2455 Hayward,
          Ann Arbor MI, 48109
          USA

Office:   1424-C, Space Research Bldg
Tel:      +1 (734)-615-5362
Fax:      +1 (734)-647-3083
E-mail:   gtoth at umich dot edu

Degree:   Ph.D. in astrophysics (Princeton University, 1993)

RESEARCH

SWMF CRASH

Space Weather Modeling Framework and Code for Radiative Shock Hydrodynamics

Publicly available software for space physics and high energy density plasma modeling. Developed at the Center for Space Environment Modeling and the Center for Radiative Shock Hydrodynamics.

The SWMF has been selected as the first physics-based geospace model at the Space Weather Prediction Center of the U.S. National Weather Service.
See news release and an interview. The selection was mostly based on the results of a thorough model comparison, see Pulkkinen et al. 2013


VAC

Versatile Advection Code

A freely available general simulation software for hydro- and magnetohydrodynamics. Originally developed as part of the Massively Parallel Programming, Computational Magneto-Fluid Dynamics project in the Netherlands from 1994-1997. The related MPI-AMRVAC code has adaptive mesh refinement.


PUBLICATIONS

List of publications

Publications on Google Scholar, ORCID, and RESEARCHERID

Publications and some conference papers produced by the Center for Space Environment Modeling.

Publications and conference papers related to the Versatile Advection Code.


COURSE NOTES


FDIPS -- Finite Difference Iterative Potential-field Solver

A public domain Fortran 90 code to calculate a potential field solution from a magnetogram using a finite difference scheme. This can provide better results than the usual method based on spherical harmonics. See our paper (PDF). The FDIPS code is available here.

ELTEX -- EL-vá-lasz-tó TEX

A public domain Perl program for translation of any Hungarian accent notation to TeX/Latex notation and for hyphenation according to Hungarian grammar. This preprocessor can do hyphenation about as well as the Babel package without needing a reconfiguration of Latex. For big projects (e.g. a book or a chapter in Hungarian) the Babel package is recommended.

Fortran compilers

GNU Fortran compiler

To install the gfortran compiler with openmpi and hdf5 1.8, do the following as super user (assuming you are using MacPorts):
# Install hdf5 + gcc6 + gfortran with openmpi
port install gcc6
port install hdf5-18 +cxx +gcc6 +fortran +openmpi +szip

cd /opt/local/bin/
ln -s gfortran-mp-6 gfortran
ln -s mpiexec-openmpi-gcc6 mpiexec
ln -s mpirun-openmpi-gcc6 mpirun
ln -s mpicc-openmpi-gcc6 mpicc
ln -s mpicxx-openmpi-gcc6 mpicxx
ln -s mpif90-openmpi-gcc6 mpif90
ln -s mpif77-openmpi-gcc6 mpif77
ln -s mpifort-openmpi-gcc6  mpifort

NAG Fortran compiler

For debugging the best Fortran compiler is the NAG Fortran compiler. Note that you have to have a valid licence. The department of CLASP bought a permanent floating license. See Share/NAGFOR for installation instructions.

Switching between Fortran compilers

To switch between the two compilers, simply change the PATH. For example define the following in .cshrc:
setenv PATH_TAIL /opt/local/bin:$HOME/bin:/usr/local/bin:/usr/bin:/bin:/opt/X11/bin:${IDL_DIR}/bin/

setenv PATH .:/usr/local/mpi/bin:${HOME}/bin/hdf5-1.8.8/bin:${PATH_TAIL}
alias load_nag "setenv PATH .:/usr/local/mpi/bin:${HOME}/bin/hdf5-1.8.8/bin:${PATH_TAIL}"
alias load_gfortran "setenv PATH .:/opt/local/lib/hdf5-18/bin:${PATH_TAIL}"
This assumes that the NAG compatible MPI library is installed into /usr/local/mpi and the NAG compatible HDF5 library is installed into ${HOME}/bin/hdf5-1.8.8.

MPI library for NAG compiler on 64-bit Mac

Click here: Share/MPI.

bbftpd for fast file transfer from super computers to your Mac

Click here: Share/BBFTPD.

tkdiff and tkcvs for Mac OSX 10.8 and newer

The tkdiff and tkcvs tools got much less usable after Mac OSX 10.8 because the default port installation uses them through the Wish program. Fortunately the tkcvs developers provide standalone binaries that work perfectly! After downloading and opening the DMG file from this site, drag tkcvs and tkdiff into the Applications folder (opened with Finder) and create a link to the executables from a directory in the path as an admin user, e.g.

cd /usr/local/bin
ln -s /Applications/TkCVS.app/Contents/MacOS/tkcvs.kit tkcvs
ln -s /Applications/TkDiff.app/Contents/MacOS/tkdiff tkdiff

As a normal user

rehash
tkdiff somefile anotherfile
tkcvs someCVSfile

If it does not work, check if there is a .tkdiffrc or .tkcvs file in the home directory with incorrect settings. Move them out of the way

mv ~/.tkdiffrc ~/.tkdiffrc_bad
mv ~/.tkcvs ~/.tcvs_bad

Once this works, uninstall the MacPort version of tkcvs/tkdiff (if it was installed):

port uninstall tkcvs


Last modified: April 4, 2017

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