1. Bostick, D. L. Wiemken, M., and S.A. Pandit (2009). A Structural and Thermodynamic Analysis of Monovalent Salt Interaction with Zwitterionic Lipid Bilayer. J. Chem. Phys. (submitted).
   
   
2. Bostick, D. L., Varma, S., Rempe, S., and C.L. Brooks III (2009). Intrinsic Evolutionary Constraints on Observed Coordination Geometry in Ion Selective Proteins. (in preparation).
   
   
3. Bostick, D. L. and C.L. Brooks III (2009). Statistical Determinants of Selective Ionic Complexation: Ions in Solvent, Channels, and Other 'Hosts.' Biophys. J. 96(11): 4470-4492. [PDF]
   
   
4. Bostick, D. L., Arora, K., and C.L. Brooks III (2009). K+/Na+ Selectivity in Toy Cation Binding Site Models is Determined by the 'Host.' Biophys. J. 96(10): 3887-3896. [PDF]
   
   
5. Bostick, D. L. and C.L. Brooks III (2007). On the Equivalence Point for Ammonium (De)protonation during its Transport through the AmtB Channel. Biophys. J. 92: L103-L105. [PDF]
   
   
6. Bostick, D. L. and C.L. Brooks III (2007). Selectivity in K+ Channels is Due to Topological Control of the Permeant Ion's Coordinated State. Proc. Natl. Acad. Sci. 104(22): 9260-9265. [PDF]
   
   
7. Bostick, D. L. and C.L. Brooks III (2007). Deprotonation by Dehydration - The Origin of Ammonium Sensing in the AmtB Channel. PLoS Comp. Biol. 3(2): 0231-0246. [PDF]
   
   
8. Berkowitz, M. L.,Bostick, D. L., and S. A. Pandit (2006). Aqueous Solutions next to Phospholipid Membrane Surfaces: Insights from Simulations. Chem. Rev. 106(4): 1527-1539. [PDF]
   
   
9. Bostick, D. L. and M. L. Berkowitz (2004). Exterior Site Occupancy Infers Chloride-induced Proton Gating in a Prokaryotic Homolog of the ClC Chloride Channel. Biophys. J. 87(3): 1686-1696. [PDF]
   
   
10. D. L. Bostick (2004). Molecular Dynamics Simulation of Biomembranes in Aqueous Solution. Physics and Astronomy Department. Chapel Hill, NC. The University of North Carolina at Chapel Hill. PhD: 173 pages. [PDF]
    
    
11. Bostick, D. L., Shen, M., and I.I. Vaisman (2004). A Simple Topological Representation of Protein Structure: Implications for New, Fast, and Robust Structural Classification. Proteins. 56(3): 487-501. [Cover] [PDF] [Supplementary Material]
    
    
12. Shimizu, K., Chaimovich, H., Farah, J. P. S., Dias, L. G., and D. L. Bostick (2004). Calculation of the Dipole Moment for Polypeptides Using the Generalized Born-Electronegativity Equalization Method: Results in Vacuum and Continuum-Dielectric Solvent. J. Phys. Chem. B. 108(13): 4171-4177. [PDF]
    
    
13. Pandit, S. A., Bostick, D. L., and M. L. Berkowitz (2003). Complexation of Phosphatidylcholine Lipids with Cholesterol. Biophys. J. 86(3): 1345-1356. [PDF]
    
    
14. Pandit, S. A., Bostick, D. L., and M. L. Berkowitz (2003). Mixed Bilayer Containing Dipalmitoylphosphatidylcholine and Dipalmitoylphosphatidylserine: Lipid Complexation, Ion Binding, and Electrostatics. Biophys. J. 85(5): 3120-3131. [PDF]
    
    
15. Bostick, D. and M. L. Berkowitz (2003). The Implementation of Slab Geometry for Membrane-channel Molecular Dynamics Simulations. Biophys. J. 85(1): 97-107. [PDF]
    
    
16. Pandit, S. A., Bostick, D., and M. L. Berkowitz (2003). Molecular Dynamics Simulation of a Dipalmitoylphosphatidylcholine Bilayer with NaCl. Biophys. J. 84(6): 3743-3750. [PDF]
    
    
17. Bostick, D. and I. I. Vaisman (2003). A New Topological Method to Measure Protein Structure Similarity. Biochem. Biophys. Res. Commun. 304: 320-325. [PDF]
    
    
18. Pandit, S. A., Bostick, D., and M. L. Berkowitz (2003). An Algorithm to Describe Molecular Scale Rugged Surfaces and its Application to the Study of a Water/Lipid Bilayer Interface. J. Chem. Phys. 119(4): 2199-2205. [PDF]