Alamethicin channel in POPC bilayer
The molecular surface shows the pore shape.
Periodic alamethicin/membrane system
The periodic box of the slab-geometry simulation of alamethicin is repeated several times.
alamethicin/membrane system
Side view of slab-periodic alamethicin system.
alamethicin/membrane system
Top-down view of slab-periodic alamethicin system.
ClC close-up in DPPC bilayer
ClC images
Two periodic images of a ClC channel system in bilayer with NaCl electrolyte.
ClC system sideview
ClC system top-down view
Top-down view of ClC simulated system. The protein is shown as a smooth molecular surface.
Gramicidin A in DMPC
Simulated gA channel in DMPC bilayer.
Halorhodopsin close-up
Close-up snapshot of halorhodopsin with chloride ion in a position corresponding to a quasi-L state.
40 mol % Cholesterol:DPPC system
Cholesterol is shown as space--filled atoms. DPPC is colored in green. The phosphorus and nitrogen atoms of the DPPC headgroup are shown as yellow and blue spheres respectively.
2:1 DPPC:Cholesterol Complex
A complex with OH...O and CH...O bonds
2:1 DPPC:Cholesterol Complex
A complex with OH...O and CH...O bonds
DPPC and Cholesterol
Hydrogen bonded networks
DPPC and Cholesterol
Hydrogen bonded network
CH...O bonded network
DPPC molecules in DPPC:DPPS mixture simulation
CH..O and NH...O bonded network
DPPS molecules in DPPC:DPPS mixture simulation
Periodic AmtB System
Top-down view of an AmtB trimer embedded in a POPC bilayer. Nine lateral periodic images are shown.
AmtB System
Side view of the central simulation cell of an AmtB trimer embedded in a POPC bilayer.
AmtB Binding Sites
X-ray determined binding sites are red, and simulation determined sites are blue.
Hydrated POPC Bilayer
Blue and gold spheres represent Nitrogen and Phosphorus headgroup atoms, respectively.