Selected Publications - J. D. Allan*

Allan. J.D. and M.M. Castillo. 2007. Stream Ecology, Second Edition. Springer (in press).

Alexander, G.G. and J.D. Allan. 2007. Ecological success in stream restoration: Case studies from the Midwestern United States. Environmental Management (in press)

Alexander, G.G. and J.D. Allan. 2006. Stream restoration in the upper Midwest, USA. Restoration Ecology 14:595-604.

Allan, J.D., R. Abell, Z. Hogan, C. Revenga, B. W. Taylor, R. L. Welcomme, and K. Winemiller. 2006. Overfishing of inland waters. BioScience 55:1041-1051.

Diana, M., J. D. Allan and Dana Infante. 2006. The influence of physical habitat and land use on stream fish assemblages in southeastern Michigan. American Fisheries Society Symposium 48:359-374.

Palmer, M.A. and J.D. Allan. 2006. Restoring rivers. Issues in Science & Technology, National Academy of Sciences, Winter, pp 40-48.

Jenkinson, R, K. Barnas, J. Braatne, E. Bernhardt, M.A. Palmer, J.D. Allan, and the National River Restoration Science Synthesis. 2006. Stream restoration databases and case studies: a guide to information resources and their utility in advancing the science and practice of restoration. Restoration Ecology 14:177-186

Wilhelm, J.G.O., J.D. Allan, K. J. Wessel, R.W. Merritt and K.W. Cummins. 2005. Habitat assessment of non-wadeable rivers in Michigan. Environmental Management 36:592-609

Allan, J.D., A. S. Flecker, S. Segnini, D. C. Taphorn, E. Sokal and G. W. Kling. 2006. The limnology of Andean piedmont rivers of Venezuela. Journal of the North American Benthological Society 25:66-81

Allan, J. D. and A.C. Benke.  2005.  Overview and prospects.  Pages 1087-1101 in A.C. Benke and C.E. Cushing (eds.)  Rivers of North America.  Elsevier, Inc., Amsterdam.

Allan, J. D., M.A. Palmer and N.L. Poff.  2005.  Climate change and freshwater ecosystems.  Pp. 272-290. in T.E. Lovejoy and L. Hannah (eds.), Climate Change and Biodiversity.  Yale University Press, New Haven CT.

Bernhardt, E. S., M. A. Palmer, J. D. Allan, G. Alexander, K. Barnas, S. Brooks, J. Carr, S. Clayton, C. Dahm, J. Follstad-Shah, D. Galat, S. Gloss, P. Goodwin, D. Hart, B. Hassett, R. Jenkinson, S. Katz, G. M. Kondolf, P. S. Lake, R. Lave, J. L. Meyer, T. K. O'Donnell, L. Pagano, B. Powell, and E. Sudduth. 2005. Restoration of U.S. Rivers - a National Synthesis. Science 308:636-637.

Palmer, M. A., E. S. Bernhardt, J. D. Allan, G. Alexander, S. Brooks, J. Carr, S. Clayton, C. N. Dahm, J. F. Shah, D. L. Galat, S. Gloss, P. Goodwin, D. D. Hart, B. Hassett, R. Jenkinson, G. M. Kondolf, R. Lave, J. L. Meyer, T. K. O'Donnell, L. Pagano, and E. Sudduth. 2005. Standards for ecologically successful river restoration. Journal of Applied Ecology 42:208-217

National Academies of Science. 2004.   Water Resources Research: Setting Priorities, Investing for the Future, and Coordinating the Effort. National Academies Press, Washington DC. .

Allan, J.D. 2004.  Influence of land use and landscape setting on the ecological status of rivers.  Limnetica 23:187-198.

Allan, J.D.  2004.  Landscape and riverscapes:  The influence of land use on river ecosystems.  Annual Reviews of Ecology, Evolution and Systematics 35:257-284

Nassauer, J.I., J.D. Allan, T. Johengen, S.E. Kosek and D. Infante.  2004.  Exurban residential suburban development:  Effects on water quality and public perception.  Urban Ecosystems 7:267-281.

Castillo, M. M., J. D. Allan, G. W. Kling, and R.L. Sinsabaugh.  2004.  Seasonal and interannual variation of bacterial production in lowland rivers of the Orinoco Basin.  Freshwater Biology 49:1400-14114.

Kopplin, S.E., J. D. Allan and J. Burch  2004. Reach and landscape-scale determinants of freshwater mussel (Bivalvia: Unionidae) distributions in an agricultural catchment, Michigan, USA.  Freshwater Biology 49:127-142.

Allan, J.D., L. Hinz, et al. 2004.  An Assessment of Flows for Rivers of the Great Lakes Basin.  Final Report to the Great Lakes Protection Fund, October, 2004.

Cifaldi, R., J.D. Allan, J-D Duh and D.B. Brown.  2003.  Spatial patterns in land cover in exurbanizing watersheds of southeastern Michigan.  Landscape and Urban Planning 66:107-123

Poff, N.L., J.D. Allan, M.A. Palmer, D.D. Hart, B. Richter, A.H. Arthington, K.H. Rogers, J.L. Meyer and J.A. Stanford.  2003. River flows and water wars: Emerging science for environmental decision-making.  Frontiers in Ecology and the Environment 1:298-306.

Allan, J.D., Mark S. Wipfli, John P. Caouette, Aaron Prussian, and Joanna Rodgers.  2003. Influence of streamside vegetation on terrestrial invertebrate subsidies to salmonid food webs.  Canadian Journal of Fisheries and Aquatic Sciences 60:309-320.

Castillo, M. M., G. W. Kling, and J. D. Allan.  2002.  Bottom-up controls on bacterial production in tropical lowland rivers.  Limnology & Oceanography 48:1466-1475. 

Lammert, M. and J. D. Allan.  1999.  Assessing biotic integrity of streams:  Effects of scale in measuring the influence of land use/cover and habitat structure on fish and macroinvertebrates.  Environmental Management 23:257-270. 

Allan, J. D., D. L. Erickson and J. Fay.  1997.  The influence of catchment land use on stream integrity across multiple spatial scales.  Freshwater Biology 37:149-162.

Allan, J. D. and L. B. Johnson:  1997.  Catchment-scale analysis of aquatic ecosystems.  Freshwater Biology 37:107-112. 

Poff, N. L., J. D. Allan, M. B. Bain, J. R. Karr, K. L. Prestegaard, B. D. Richter, R. E. Sparks and J. C. Stromberg.  1997.  The natural flow regime:  A paradigm for river conservation and restoration. BioScience 47:769-784. 

Poff, N. L. and J. D. Allan.  1995.  Functional organization in stream fish assemblages in relation to hydrologic variability.  Ecology, 76:606-627. 

Allan, J. D. and A. S. Flecker.  1993. Biodiversity conservation in running waters.  BioScience, 43: 32‑43.

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